Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20021
(476 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62913 Cluster: 60S ribosomal protein L11; n=156; Eukar... 177 1e-43
UniRef50_P0C0W9 Cluster: 60S ribosomal protein L11-A; n=25; Euka... 150 2e-35
UniRef50_P42794 Cluster: 60S ribosomal protein L11-2; n=38; Euka... 150 2e-35
UniRef50_UPI000155375A Cluster: PREDICTED: similar to ribosomal ... 118 5e-26
UniRef50_A0DI11 Cluster: Chromosome undetermined scaffold_51, wh... 113 2e-24
UniRef50_Q6LXE0 Cluster: 50S ribosomal protein L5P; n=7; Euryarc... 88 8e-17
UniRef50_A3H987 Cluster: Ribosomal protein L5; n=1; Caldivirga m... 87 1e-16
UniRef50_UPI00015BB1AB Cluster: LSU ribosomal protein L5P; n=1; ... 85 1e-15
UniRef50_Q9YF87 Cluster: 50S ribosomal protein L5P; n=20; Archae... 84 1e-15
UniRef50_Q8PV37 Cluster: 50S ribosomal protein L5P; n=6; Methano... 79 4e-14
UniRef50_Q74N79 Cluster: 50S ribosomal protein L5P; n=1; Nanoarc... 78 1e-13
UniRef50_Q3LWF5 Cluster: Ribosomal protein L11; n=1; Bigelowiell... 77 2e-13
UniRef50_O28367 Cluster: 50S ribosomal protein L5P; n=1; Archaeo... 77 2e-13
UniRef50_Q673R5 Cluster: Ribosomal protein L5/L11; n=2; environm... 76 4e-13
UniRef50_Q46GA8 Cluster: 50S ribosomal protein L5P; n=3; Methano... 75 6e-13
UniRef50_A7DSY1 Cluster: Ribosomal protein L5; n=1; Candidatus N... 74 1e-12
UniRef50_A5UL75 Cluster: Ribosomal protein L5p; n=1; Methanobrev... 74 1e-12
UniRef50_Q6L1B4 Cluster: 50S ribosomal protein L5P; n=4; Thermop... 74 2e-12
UniRef50_A0RVY6 Cluster: Ribosomal protein L5; n=1; Cenarchaeum ... 70 2e-11
UniRef50_P14124 Cluster: 50S ribosomal protein L5P; n=5; Halobac... 69 7e-11
UniRef50_Q6CKT5 Cluster: Similarity; n=1; Kluyveromyces lactis|R... 66 4e-10
UniRef50_Q01C63 Cluster: Chromosome 03 contig 1, DNA sequence; n... 59 4e-08
UniRef50_Q7R5U0 Cluster: GLP_81_173473_174138; n=1; Giardia lamb... 41 0.016
UniRef50_P38517 Cluster: 50S ribosomal protein L5; n=18; cellula... 34 1.9
UniRef50_A6CBF6 Cluster: Putative uncharacterized protein; n=1; ... 33 2.5
UniRef50_Q8XMC3 Cluster: Putative uncharacterized protein CPE076... 33 3.3
UniRef50_Q11UJ1 Cluster: Endoglucanase, glycoside hydrolase fami... 33 3.3
UniRef50_Q1Q797 Cluster: Similar to cobalamin 5'-phosphate synth... 33 4.3
UniRef50_A3CXT4 Cluster: Zinc finger, AN1-type; n=1; Methanocull... 32 5.7
UniRef50_Q30TV2 Cluster: 50S ribosomal protein L5; n=2; Epsilonp... 32 5.7
UniRef50_Q7WFV5 Cluster: Putative uncharacterized protein; n=3; ... 31 10.0
UniRef50_Q1PLH5 Cluster: ORF16-like conjugation protein from Tn9... 31 10.0
UniRef50_A5FG97 Cluster: Glucose-1-phosphate adenylyltransferase... 31 10.0
UniRef50_Q9M8J7 Cluster: F28L1.15 protein; n=8; core eudicotyled... 31 10.0
UniRef50_A7P4M8 Cluster: Chromosome chr4 scaffold_6, whole genom... 31 10.0
>UniRef50_P62913 Cluster: 60S ribosomal protein L11; n=156;
Eukaryota|Rep: 60S ribosomal protein L11 - Homo sapiens
(Human)
Length = 178
Score = 177 bits (431), Expect = 1e-43
Identities = 92/142 (64%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Frame = +1
Query: 55 EDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVV 234
+ +N MR L IRKLCLNICVGESGDRLTRAAKVLEQLTG + F +
Sbjct: 5 QGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRR 64
Query: 235 MKRLLSMYSPR-AKAEEIL-RXFKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIG 408
+++ + R AKAEEIL + KVREYELR++NFS TGNFGFGIQEHIDLGIKYDPSIG
Sbjct: 65 NEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIG 124
Query: 409 IYGLDFYVVLCRPGFNVAHRRR 474
IYGLDFYVVL RPGF++A ++R
Sbjct: 125 IYGLDFYVVLGRPGFSIADKKR 146
>UniRef50_P0C0W9 Cluster: 60S ribosomal protein L11-A; n=25;
Eukaryota|Rep: 60S ribosomal protein L11-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 174
Score = 150 bits (363), Expect = 2e-35
Identities = 81/139 (58%), Positives = 98/139 (70%), Gaps = 2/139 (1%)
Frame = +1
Query: 64 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVVMKR 243
++N MR+L I KL LNI VGESGDRLTRA+KVLEQL+G + + ++
Sbjct: 5 AQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEK 64
Query: 244 LLSMYSPRA-KAEEIL-RXFKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 417
+ + R KAEEIL R KV+EY+LR NFSATGNFGFGI EHIDLGIKYDPSIGI+G
Sbjct: 65 IAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFG 124
Query: 418 LDFYVVLCRPGFNVAHRRR 474
+DFYVV+ RPG V R+R
Sbjct: 125 MDFYVVMNRPGARVTRRKR 143
>UniRef50_P42794 Cluster: 60S ribosomal protein L11-2; n=38;
Eukaryota|Rep: 60S ribosomal protein L11-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 182
Score = 150 bits (363), Expect = 2e-35
Identities = 81/143 (56%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Frame = +1
Query: 52 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSV 231
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+G + F +
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 232 VMKRLLSMYSPRA-KAEEILRX-FKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSI 405
+++ + R KA ++L KV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS
Sbjct: 63 RNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPST 122
Query: 406 GIYGLDFYVVLCRPGFNVAHRRR 474
GIYG+DFYVVL RPG+ VA RRR
Sbjct: 123 GIYGMDFYVVLERPGYRVARRRR 145
>UniRef50_UPI000155375A Cluster: PREDICTED: similar to ribosomal
protein L11; n=1; Mus musculus|Rep: PREDICTED: similar
to ribosomal protein L11 - Mus musculus
Length = 279
Score = 118 bits (285), Expect = 5e-26
Identities = 56/70 (80%), Positives = 63/70 (90%), Gaps = 1/70 (1%)
Frame = +1
Query: 268 AKAEEIL-RXFKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLCR 444
AKAEEIL + KVREYELR++NFS TGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL R
Sbjct: 131 AKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGR 190
Query: 445 PGFNVAHRRR 474
GF++A ++R
Sbjct: 191 SGFSIADKKR 200
Score = 50.4 bits (115), Expect = 2e-05
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +3
Query: 183 PVFSKARYTVRSFGIRRNEKIAVHVQSEG 269
PV SKARYTVRSFGIRRNEKIAVH G
Sbjct: 102 PVESKARYTVRSFGIRRNEKIAVHCTVRG 130
>UniRef50_A0DI11 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_51,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 197
Score = 113 bits (272), Expect = 2e-24
Identities = 63/135 (46%), Positives = 89/135 (65%), Gaps = 5/135 (3%)
Frame = +1
Query: 55 EDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYF--PRLGIQC-GLLV 225
++ +NVMR + I KL ++IC GESGD+LT+AAKVLE LTG F R ++ G+
Sbjct: 32 QETKENVMRKIRIEKLMVHICAGESGDKLTKAAKVLEDLTGQKPVFGKARYTVRSFGIRR 91
Query: 226 SVVMKRLLSMYSPRAKAEEILRXFKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSI 405
+ + ++ +A+ + ++R +V+E EL++ NFS +GNFGFGIQEHIDLG+KYDP
Sbjct: 92 NEKISVFCTIRGDQAR-DILVRGLRVKEMELKKRNFSESGNFGFGIQEHIDLGLKYDPYT 150
Query: 406 GI--YGLDFYVVLCR 444
GI YGL VV R
Sbjct: 151 GIFRYGLLCCVVKTR 165
>UniRef50_Q6LXE0 Cluster: 50S ribosomal protein L5P; n=7;
Euryarchaeota|Rep: 50S ribosomal protein L5P -
Methanococcus maripaludis
Length = 181
Score = 88.2 bits (209), Expect = 8e-17
Identities = 59/143 (41%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Frame = +1
Query: 67 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVVMKRL 246
K M+ I+K+ +N VGE+GDRLT AKV+E+LTG S L Q + K+L
Sbjct: 9 KEPMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQS-PVRTLAKQTNPAFG-IRKKL 66
Query: 247 ---LSMYSPRAKAEEILR----XFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDPS 402
L + KAEE L+ FK L +F GNF FG+ EHID G KYDPS
Sbjct: 67 PIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPS 126
Query: 403 IGIYGLDFYVVLCRPGFNVAHRR 471
+GIYG+D V + G+ V R+
Sbjct: 127 VGIYGMDICVTFEKSGYRVKSRK 149
>UniRef50_A3H987 Cluster: Ribosomal protein L5; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L5 -
Caldivirga maquilingensis IC-167
Length = 197
Score = 87.4 bits (207), Expect = 1e-16
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Frame = +1
Query: 76 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVVMKRLLSM 255
MR + I + +N+ +G+SG+RL +AAKV+ +LTG + + RL + + + +
Sbjct: 32 MRRIFIWSVAVNMGIGQSGERLEKAAKVMSELTGRTPSY-RLAHKSIKDFGIRRGEPIGL 90
Query: 256 YSPRAKAEEI---LRXFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDPSIGIYGLD 423
+ E + LR ++ LR ++F+A GN FGI+EHI + G +YDP++GI+G D
Sbjct: 91 LVTLRRNEAVWFLLRALAAVDFTLREESFNA-GNVSFGIREHILVPGSRYDPALGIFGFD 149
Query: 424 FYVVLCRPGFNVAHRRR 474
V L RPGF V +RRR
Sbjct: 150 VAVTLARPGFRVQYRRR 166
>UniRef50_UPI00015BB1AB Cluster: LSU ribosomal protein L5P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L5P - Ignicoccus hospitalis KIN4/I
Length = 198
Score = 84.6 bits (200), Expect = 1e-15
Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 8/136 (5%)
Frame = +1
Query: 91 IRKLCLNICVGESGDRLTRAAKVLEQLTGN-------SLYFPRLGIQCGLLVSVVMKRLL 249
+ K+ +NI +GESG+RL +A +LE+LTG + GI+ G ++V ++
Sbjct: 38 LAKVTVNIALGESGERLEKAYNLLEELTGQRPVKRKAKKTIRQFGIRRGENIAV----MV 93
Query: 250 SMYSPRAKAEEILRXFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDPSIGIYGLDF 426
++ RA E + + + ++++ +F GN GFGI+EHI + G +YDP +GI+G+D
Sbjct: 94 TLRGQRA-VEFLKKALEAVGWKIKASSFDEFGNVGFGIREHIQIPGTRYDPRVGIFGMDV 152
Query: 427 YVVLCRPGFNVAHRRR 474
+ + RPG+ VA RRR
Sbjct: 153 ILTIERPGYRVARRRR 168
>UniRef50_Q9YF87 Cluster: 50S ribosomal protein L5P; n=20;
Archaea|Rep: 50S ribosomal protein L5P - Aeropyrum
pernix
Length = 192
Score = 84.2 bits (199), Expect = 1e-15
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 3/139 (2%)
Frame = +1
Query: 67 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVVMKRL 246
++ MR I K+ +NI +G+SG+RL RAA+VLE+LTG F + + +
Sbjct: 24 RSPMRRPRIVKVTVNISIGQSGERLQRAAEVLEELTGQKPVFRKAKRTIRAFGVRKGENI 83
Query: 247 LSMYSPRA-KAEEIL-RXFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDPSIGIYG 417
M + R KA L R + ++ + GN FGI+EHI + G+KYDP +GI G
Sbjct: 84 AVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILG 143
Query: 418 LDFYVVLCRPGFNVAHRRR 474
+D + + RPG + RRR
Sbjct: 144 MDVAITIQRPGHRIVERRR 162
>UniRef50_Q8PV37 Cluster: 50S ribosomal protein L5P; n=6;
Methanomicrobia|Rep: 50S ribosomal protein L5P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 169
Score = 79.4 bits (187), Expect = 4e-14
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Frame = +1
Query: 70 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSL---YFPRLGIQCGLLVSVVMK 240
N MR + K+ +++ VGESG L A ++L+ +TG + + R + + +
Sbjct: 3 NPMRTPMVEKVIVHMGVGESGQHLVNAEEILKTITGQEVVRCFAKRTLPAFSIKKNEPIG 62
Query: 241 RLLSMYSPRAKAEEILRXFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDPSIGIYG 417
+++ RA+ E + F++ E L R F + GN FGI+EH D G++YDP+IG++G
Sbjct: 63 CKVTLRGQRAQ-EFLGTSFEIIEKTLSRAQFDSLGNVSFGIEEHTDFPGMRYDPNIGVFG 121
Query: 418 LDFYVVLCRPGFNVAHRR 471
+D VVL RPG + RR
Sbjct: 122 MDVTVVLKRPGERICKRR 139
>UniRef50_Q74N79 Cluster: 50S ribosomal protein L5P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L5P -
Nanoarchaeum equitans
Length = 169
Score = 77.8 bits (183), Expect = 1e-13
Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Frame = +1
Query: 76 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLL-VSVVMKRLLS 252
MR + I K+ LNI VGESG++L +A ++L++LTG + ++ + + +
Sbjct: 5 MRKIRIEKVTLNIGVGESGEKLDKAYELLKRLTGQKPVKTKAKVRVEQWHIRPGLPIGVK 64
Query: 253 MYSPRAKAEEILRX--FKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDPSIGIYGLD 423
+ KA +IL+ +++++ +F+ G FGFGI E+I + G+KYDP +G+ GL+
Sbjct: 65 VTLRGEKAYKILKEKLLPAVDFKIKASSFTDRG-FGFGIPEYIMIPGMKYDPELGLIGLE 123
Query: 424 FYVVLCRPGFNVAHRR 471
YV L RPG+ V RR
Sbjct: 124 AYVTLERPGYRVERRR 139
>UniRef50_Q3LWF5 Cluster: Ribosomal protein L11; n=1; Bigelowiella
natans|Rep: Ribosomal protein L11 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 139
Score = 77.4 bits (182), Expect = 2e-13
Identities = 42/133 (31%), Positives = 76/133 (57%), Gaps = 5/133 (3%)
Frame = +1
Query: 76 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVVMKR--LL 249
M+ + + KL L+I VG SG L +++K+L+++ SL FP G+ + + ++R +
Sbjct: 1 MKQIFLNKLILSIDVGSSGSNLYKSSKLLKKI---SLQFPSFGMAKRTIKTFSIRRGEYI 57
Query: 250 SMYSPRAKAEEIL---RXFKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGL 420
S + +K + IL + K++ + + NFS T FG GI +H++LG +D IGI+G+
Sbjct: 58 SCFCSLSKKKGILFLYKMLKLKTFTINESNFSLTSTFGIGISDHLELGYNFDQKIGIHGI 117
Query: 421 DFYVVLCRPGFNV 459
+ L R G+ +
Sbjct: 118 NIIGDLSRRGYRI 130
>UniRef50_O28367 Cluster: 50S ribosomal protein L5P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L5P -
Archaeoglobus fulgidus
Length = 178
Score = 77.4 bits (182), Expect = 2e-13
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Frame = +1
Query: 64 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGN--SLYFPRLGIQ-CGLLVSVV 234
++N MR + + K+ +NI VGESG+R +A +LE+L ++ + ++ I+ G+
Sbjct: 12 NENPMREVVLDKVVINIGVGESGERHKKAYSLLEELVEQKPAITYAKMTIKNFGIRKGEA 71
Query: 235 MKRLLSMYSPRAKAEEILRXFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDPSIGI 411
+ +++ +A + + V+E L R + G F FGI EHIDL G+ YDP +GI
Sbjct: 72 IGIKVTLRGEKA-LKFLKDALTVKENRLSRKSIGE-GYFAFGIAEHIDLPGVDYDPDVGI 129
Query: 412 YGLDFYVVLCRPGFNVAHRRR 474
+G+D V L R G+ VA RRR
Sbjct: 130 FGMDVCVSLKRRGYRVARRRR 150
>UniRef50_Q673R5 Cluster: Ribosomal protein L5/L11; n=2;
environmental samples|Rep: Ribosomal protein L5/L11 -
uncultured marine group II euryarchaeote DeepAnt-JyKC7
Length = 168
Score = 76.2 bits (179), Expect = 4e-13
Identities = 58/141 (41%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Frame = +1
Query: 91 IRKLCLNICVGESGDRLTRAAKVLEQLTG-----------NSLYFPRLGIQCGLLVSVVM 237
I K+ +NI VGE G RL A +VLE LTG N RLG G V++
Sbjct: 6 ITKVTVNIGVGEGGSRLQLAERVLELLTGLKPIRTISRMTNRDLGTRLGAPIGCKVTI-- 63
Query: 238 KRLLSMYSPRAKAEEILRX-FKVREYELRRDNFSATGNFGFGIQEHIDLGI-KYDPSIGI 411
K + L+ F VRE L NF +GN FGI ++ D KYDP IGI
Sbjct: 64 -------RDADKVQSFLKDAFWVRENTLPSYNFDQSGNLSFGIADYTDFPAQKYDPDIGI 116
Query: 412 YGLDFYVVLCRPGFNVAHRRR 474
YG+D VVL RPG V+ RRR
Sbjct: 117 YGMDVNVVLERPGHRVSRRRR 137
>UniRef50_Q46GA8 Cluster: 50S ribosomal protein L5P; n=3;
Methanomicrobia|Rep: 50S ribosomal protein L5P -
Methanosarcina barkeri (strain Fusaro / DSM 804)
Length = 169
Score = 75.4 bits (177), Expect = 6e-13
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Frame = +1
Query: 70 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLY--FPRLGIQC-GLLVSVVMK 240
NVMR + K+ +++ VGESG L A ++L +TG + F + + + + +
Sbjct: 3 NVMRTPVVEKVIVHMGVGESGQHLVDAEEILRNITGQEVVRCFAKRTLPAFSIKKNEPIG 62
Query: 241 RLLSMYSPRAKAEEILRXFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDPSIGIYG 417
+++ RA+ + + + + L R F + GN FGI+EH D G+KYDP+IG++G
Sbjct: 63 CKVTLRGQRAQ-QFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTDFPGMKYDPNIGVFG 121
Query: 418 LDFYVVLCRPGFNVAHRR 471
+D VV+ RPG + RR
Sbjct: 122 MDVTVVIKRPGERICKRR 139
>UniRef50_A7DSY1 Cluster: Ribosomal protein L5; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L5
- Candidatus Nitrosopumilus maritimus SCM1
Length = 173
Score = 74.1 bits (174), Expect = 1e-12
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
Frame = +1
Query: 64 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTG------NSLYFPR-LGIQCGLL 222
+++ M+ + + K+ LN+ VG+SGD + A++ LEQ++G N+ R G++ G
Sbjct: 5 TESPMKKISLEKVVLNMGVGKSGDVIEIASRALEQISGKKPSARNAKETQRDWGVRKGEP 64
Query: 223 VSVVMKRLLSMYSPRAKAEEILRXFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDP 399
+ V + ++ AKA + R + + + F GN+ FGI+EHID+ G+KY+P
Sbjct: 65 IGVAV----TIRGDDAKAL-LKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEP 119
Query: 400 SIGIYGLDFYVVLCRPGFNVAHRRR 474
SIGI GL V L RPG+ + R +
Sbjct: 120 SIGILGLGISVTLTRPGYGIRTRSK 144
>UniRef50_A5UL75 Cluster: Ribosomal protein L5p; n=1;
Methanobrevibacter smithii ATCC 35061|Rep: Ribosomal
protein L5p - Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861)
Length = 170
Score = 74.1 bits (174), Expect = 1e-12
Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 5/139 (3%)
Frame = +1
Query: 70 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQL---TGNSLYFPRLGIQCGLLVSVVMK 240
N M + I K ++I VGE+G++L+RA +LEQ+ T + + G+ +
Sbjct: 2 NPMNEVQISKATVSIGVGEAGEKLSRAITLLEQMFDQTPVKTFSKVTNPEFGIRKRQPIA 61
Query: 241 RLLSMYSPRA-KAEEILRXFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDPSIGIY 414
L++ +A KA E++ + ++ F A GN FGI+EHID+ G+KY+P IGI+
Sbjct: 62 CKLTLRGEKADKAIEMV--LEGINKNIKPTQFDAQGNLSFGIKEHIDIPGMKYNPDIGIF 119
Query: 415 GLDFYVVLCRPGFNVAHRR 471
G++ V +PG+ +A RR
Sbjct: 120 GMNVSVTFEKPGYRIAKRR 138
>UniRef50_Q6L1B4 Cluster: 50S ribosomal protein L5P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L5P -
Picrophilus torridus
Length = 176
Score = 73.7 bits (173), Expect = 2e-12
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 9/147 (6%)
Frame = +1
Query: 58 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPR-------LGIQCG 216
+ ++N MR + I K+ +NI VG +G+RL RAAKVLE LT + F I+ G
Sbjct: 3 ETTENSMREIVIDKVVVNIGVGAAGERLNRAAKVLELLTHHKPAFTSAKRTVRDFNIRKG 62
Query: 217 LLVSVVMKRLLSMYSPRAKAEEILRXFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKY 393
L + V K L + +E F ++Y++ +F GN FGI ++ D G+KY
Sbjct: 63 LNIGV--KVTLRKDDALSFLKE---AFYAKDYKIPVYSFDKNGNAYFGISDYTDFKGMKY 117
Query: 394 DPSIGIYGLDFYVVL-CRPGFNVAHRR 471
DP IGI+G+D +V R G+ + RR
Sbjct: 118 DPDIGIFGMDIAIVFRRRGGYRIEKRR 144
>UniRef50_A0RVY6 Cluster: Ribosomal protein L5; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L5 - Cenarchaeum
symbiosum
Length = 169
Score = 70.1 bits (164), Expect = 2e-11
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Frame = +1
Query: 76 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLY---FPRLGIQCGLLVSVVMKRL 246
MR + + K+ LN+ VG+SG+ + A + L +++G G+ +
Sbjct: 5 MRKITLEKVVLNMGVGQSGNAVEVAKRALGEISGKKPCGRDAHETQRDFGVRKGEPIGAA 64
Query: 247 LSMYSPRAKAEEILRXFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDPSIGIYGLD 423
+++ A A R F+ + +++ +F GNF FGI EHID+ GIKYDP IGI GLD
Sbjct: 65 VTIRGEDAGALA-RRLFEAKGGQVKGRSFDDFGNFSFGIGEHIDIPGIKYDPGIGILGLD 123
Query: 424 FYVVLCRPGFNVAHRRR 474
+ L RPG+ + R +
Sbjct: 124 VCMTLSRPGYGIRKRSK 140
>UniRef50_P14124 Cluster: 50S ribosomal protein L5P; n=5;
Halobacteriaceae|Rep: 50S ribosomal protein L5P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 68.5 bits (160), Expect = 7e-11
Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Frame = +1
Query: 76 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVVMKRLLSM 255
MR I K+ +++ +G G L A +L ++TG + G + +
Sbjct: 14 MREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAK 73
Query: 256 YSPRAK-AEEILRXFKVREYELRRDNFSATGNFGFGIQEHIDL-GIKYDPSIGIYGLDFY 429
+ R + AEE L+ + EL F TGNF FG++EH + +YDPSIGIYGLD
Sbjct: 74 VTLRDEMAEEFLQT-ALPLAELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVT 132
Query: 430 VVLCRPGFNVAHR 468
V L RPG+ VA R
Sbjct: 133 VNLVRPGYRVAKR 145
>UniRef50_Q6CKT5 Cluster: Similarity; n=1; Kluyveromyces lactis|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 191
Score = 66.1 bits (154), Expect = 4e-10
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Frame = -3
Query: 450 TWPAKYDVKVQSINSN*GIVLDTQVNVFLNTEAKITRGGEVVTPQFIFSDFKPS-KDLFC 274
TW +V++ ++N++ +VLDTQ++VFL+TE ++T EV Q +F D + S +D F
Sbjct: 44 TWSTHDNVEIHTVNTDTWVVLDTQIDVFLDTETEVTGSREVSVSQLVFLDLQTSFQDFFS 103
Query: 273 FSPRTVHGQQSFHYDGYQKTALYT*PWKIQ-AVSCELLQHLGGTSQPVTGFTNTDVQAKL 97
+ + +++ + +++ +L Q+LG + Q VT FTN ++Q +
Sbjct: 104 LWTTNSNVDSNLFVSSDTESSDSVSSLGLNWSLTRQLFQNLGSSGQSVTRFTNRNIQDQF 163
Query: 96 SDMKIPHYI 70
D++ H +
Sbjct: 164 LDLQFTHRV 172
>UniRef50_Q01C63 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 363
Score = 59.3 bits (137), Expect = 4e-08
Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Frame = -3
Query: 474 TPSVCNVETWPAKYDVKVQSINSN*GIVLDTQVNVFLNTEAKITRGGEVVTPQFIFSDFK 295
TP+V +V ++DV++ +++ +VLD +VNVF +TE ++TRG EV +F F +
Sbjct: 66 TPAVDSVAR-ALQHDVEIHTVDPCGRVVLDAEVNVFADTETEVTRGAEVALEEFEFLHLE 124
Query: 294 PS-KDLFCFSPRT---VHGQQSFHYDGYQKTALYT*PWKIQAVSCELLQHLGGTSQPVTG 127
P+ ++L P T V G F ++ + + ++ +LLQHL + +T
Sbjct: 125 PALQNLHRLVPVTNGDVRG-DLFVTANAERAHGVARLGEDRLLTGQLLQHLRRLREAITA 183
Query: 126 FTNTDVQAKLSDMKIPHYIFRII 58
N +V+ +L + PH + R++
Sbjct: 184 LANANVEHELVNADRPHRVLRLV 206
>UniRef50_Q7R5U0 Cluster: GLP_81_173473_174138; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_81_173473_174138 - Giardia lamblia
ATCC 50803
Length = 221
Score = 40.7 bits (91), Expect = 0.016
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = -3
Query: 471 PSVCNVETWPAKYDVKVQSINSN*GIVLDTQVNVFLNTEAKITRGGEVVTPQFIFSDFKP 292
P++ + E K V+V +I+++ +VLD ++NVF + E +++ GGE QF D +
Sbjct: 65 PALIDAEPGARKDHVEVHTIDTHGRVVLDPEINVFRDAEPEVSSGGEARVGQFKVLDAEA 124
Query: 291 SKD 283
+ D
Sbjct: 125 ALD 127
>UniRef50_P38517 Cluster: 50S ribosomal protein L5; n=18; cellular
organisms|Rep: 50S ribosomal protein L5 - Thermotoga
maritima
Length = 184
Score = 33.9 bits (74), Expect = 1.9
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Frame = +1
Query: 55 EDNSKNVMRNLHIRKLCLNICVGESG---DRLTRAAKVLEQLTGNSLYFPR-------LG 204
E N KN+ + + K+ +N+ +GE D + R A L ++TG R
Sbjct: 23 EFNYKNIHQVPKLVKIVINMGIGEGSRNYDLIERHANELAKITGQKPIVTRARKSISNFK 82
Query: 205 IQCGLLVSV-VMKRLLSMYSPRAKAEEILRXFKVREYE-LRRDNFSATGNFGFGIQEHID 378
I+ G+ + + V R MY+ K I+ KVR++ L ++F GN+ FG+ E +
Sbjct: 83 IRKGMPIGLKVTLRGARMYNFLYKLINIVLP-KVRDFRGLDPNSFDGRGNYSFGLSEQLV 141
Query: 379 L-GIKYDPSIGIYGLDFYVV 435
+ D I G+D +V
Sbjct: 142 FPELNPDEVRRIQGMDITIV 161
>UniRef50_A6CBF6 Cluster: Putative uncharacterized protein; n=1;
Planctomyces maris DSM 8797|Rep: Putative uncharacterized
protein - Planctomyces maris DSM 8797
Length = 1731
Score = 33.5 bits (73), Expect = 2.5
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -3
Query: 249 QQSFHYDGYQKTALYT*PWKIQAVSCELLQHLGGTSQPVTGF---TNTDVQAKLSDMK 85
QQ +H G Q PW+ QAVS LLQ LG +Q +T F +N ++ L +K
Sbjct: 1230 QQIYHVVGKQTAGKTFEPWQFQAVSA-LLQSLGRRNQSLTQFYQKSNQQLREVLDQLK 1286
>UniRef50_Q8XMC3 Cluster: Putative uncharacterized protein CPE0766;
n=10; Clostridium|Rep: Putative uncharacterized protein
CPE0766 - Clostridium perfringens
Length = 464
Score = 33.1 bits (72), Expect = 3.3
Identities = 28/98 (28%), Positives = 47/98 (47%)
Frame = +1
Query: 58 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVVM 237
+ KN++ L+ R+ LN+ E L A KV+ GN++ + LV+
Sbjct: 42 NGEKNII--LNFRETFLNLDEDEYFKYLEIAKKVMSGTIGNNILELNFPLN-DYLVNERQ 98
Query: 238 KRLLSMYSPRAKAEEILRXFKVREYELRRDNFSATGNF 351
L+ + + + K +E+L F Y+L DN+ TGNF
Sbjct: 99 VSLMQLKNSQLKDDELLNDF----YKLVIDNYDYTGNF 132
>UniRef50_Q11UJ1 Cluster: Endoglucanase, glycoside hydrolase family
9 protein; n=1; Cytophaga hutchinsonii ATCC 33406|Rep:
Endoglucanase, glycoside hydrolase family 9 protein -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 854
Score = 33.1 bits (72), Expect = 3.3
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 168 LLQHLGGTSQPVTG-FTNTDVQAKLSDMKIPHYIFRI 61
++ L G PVTG ++ TD+Q LSD+K Y+ R+
Sbjct: 803 IILDLNGREYPVTGDWSTTDIQLNLSDLKAGMYLIRL 839
>UniRef50_Q1Q797 Cluster: Similar to cobalamin 5'-phosphate
synthase; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to cobalamin 5'-phosphate synthase - Candidatus
Kuenenia stuttgartiensis
Length = 274
Score = 32.7 bits (71), Expect = 4.3
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 187 YFPRLGIQCGLLVSVVMKRLLSMYSPRAKAEEILRXFKVREYELRRDNFSAT--GNFGFG 360
+FP +GI G ++SVV L +++ P IL + V L D F+ T G +G G
Sbjct: 32 WFPIVGIVIGAILSVVSLLLQNVFPPCITNAFILITYIVITGALHLDGFADTCDGIYG-G 90
Query: 361 IQEHIDLGIKYDPSIGIYGL 420
+ L I D IG YG+
Sbjct: 91 WNKEKRLEIMKDSHIGSYGV 110
>UniRef50_A3CXT4 Cluster: Zinc finger, AN1-type; n=1; Methanoculleus
marisnigri JR1|Rep: Zinc finger, AN1-type -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 415
Score = 32.3 bits (70), Expect = 5.7
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 19 CVEER*KGEEGSEDNSK-NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFP 195
CV+ER E SED S+ + N H RK ++ +T+ VL + G +L++P
Sbjct: 54 CVQERYSYTENSEDYSRYSDNANGHSRKTSSQRLARQTEQEITKTLAVLAIVVGLALFYP 113
Query: 196 RL 201
++
Sbjct: 114 QI 115
>UniRef50_Q30TV2 Cluster: 50S ribosomal protein L5; n=2;
Epsilonproteobacteria|Rep: 50S ribosomal protein L5 -
Thiomicrospira denitrificans (strain ATCC 33889 / DSM
1351)
Length = 181
Score = 32.3 bits (70), Expect = 5.7
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 298 KVREYE-LRRDNFSATGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVV 435
+V+++ + R+ F GN+ FG+QE + + YD + I+G++ VV
Sbjct: 109 RVKDFRGVPRNGFDGRGNYNFGLQEQLIFPEVSYDSVMQIHGMNITVV 156
>UniRef50_Q7WFV5 Cluster: Putative uncharacterized protein; n=3;
Bordetella|Rep: Putative uncharacterized protein -
Bordetella bronchiseptica (Alcaligenes bronchisepticus)
Length = 414
Score = 31.5 bits (68), Expect = 10.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 398 PQLEFMDWTFTSYFAGQVSTLHT 466
P E DW F YFAG+VS L T
Sbjct: 200 PSEELCDWGFLGYFAGEVSGLRT 222
>UniRef50_Q1PLH5 Cluster: ORF16-like conjugation protein from
Tn916-like elements; n=6; Clostridium perfringens|Rep:
ORF16-like conjugation protein from Tn916-like elements
- Clostridium perfringens
Length = 841
Score = 31.5 bits (68), Expect = 10.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 25 EER*KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTR-AAKVLEQLTGNSLYF 192
+E + + +E K V RN HI + ++IC+ + +++ R KVL + SL F
Sbjct: 351 DEEYEAKAAAESLEKEVKRNKHIIETSISICLASTKEKIVRNNTKVLMEYFNKSLKF 407
>UniRef50_A5FG97 Cluster: Glucose-1-phosphate adenylyltransferase;
n=7; Bacteroidetes|Rep: Glucose-1-phosphate
adenylyltransferase - Flavobacterium johnsoniae UW101
Length = 426
Score = 31.5 bits (68), Expect = 10.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 275 ALALGLYMDSNLFITTDTKRPHCIPSLGKYRLFPVSCSNTL 153
A+ LG S LF T+T+ +P GKYRL + SN +
Sbjct: 10 AIILGGGQGSRLFPLTETRSKPAVPIGGKYRLVDIPISNCI 50
>UniRef50_Q9M8J7 Cluster: F28L1.15 protein; n=8; core
eudicotyledons|Rep: F28L1.15 protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 840
Score = 31.5 bits (68), Expect = 10.0
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 278 KRSLXGLKSENMNCGVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYFAGQV 451
KR G+ ++ G+ + R+ +F + TLTW +S +P L + W + S + ++
Sbjct: 168 KRISDGIFKPILDNGLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>UniRef50_A7P4M8 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 840
Score = 31.5 bits (68), Expect = 10.0
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 196 RLGIQCGLLVSVVMKRLLSMYSPRAKAEEILRXFKVREYELRRDNFSATGNFGFGIQEHI 375
+L I GL+ + + M P A+E+L+ + +R YELR D+F + F +Q
Sbjct: 214 QLTILDGLVQKIADMVVERMGGPVGDADEMLKRWTIRSYELRIDHFRQSSLVLFLVQPTF 273
Query: 376 DL 381
+L
Sbjct: 274 NL 275
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,309,560
Number of Sequences: 1657284
Number of extensions: 9121854
Number of successful extensions: 24494
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 23885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24461
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -