Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20021
         (476 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   5.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   5.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   5.8  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 409 IYGLDFYVVLCRPGF 453
           I G++ Y+  C+PGF
Sbjct: 39  IDGINSYICTCKPGF 53


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 352 QNYPWRRSCHAA 317
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 352 QNYPWRRSCHAA 317
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 352 QNYPWRRSCHAA 317
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,337
Number of Sequences: 336
Number of extensions: 2324
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)