Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20021
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   158   4e-40
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   158   4e-40
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    30   0.16 
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    27   1.5  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.5  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   7.9  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  158 bits (384), Expect = 4e-40
 Identities = 83/140 (59%), Positives = 101/140 (72%), Gaps = 2/140 (1%)
 Frame = +1

Query: 58  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVVM 237
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+G +  F +             
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 238 KRLLSMYSPRA-KAEEIL-RXFKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 411
           +++    + R  KAEEIL R  KV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGI
Sbjct: 63  EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122

Query: 412 YGLDFYVVLCRPGFNVAHRR 471
           YG+DFYVV+ RPG  VA R+
Sbjct: 123 YGMDFYVVMDRPGMRVARRK 142


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  158 bits (384), Expect = 4e-40
 Identities = 83/140 (59%), Positives = 101/140 (72%), Gaps = 2/140 (1%)
 Frame = +1

Query: 58  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSVVM 237
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+G +  F +             
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 238 KRLLSMYSPRA-KAEEIL-RXFKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 411
           +++    + R  KAEEIL R  KV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGI
Sbjct: 63  EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122

Query: 412 YGLDFYVVLCRPGFNVAHRR 471
           YG+DFYVV+ RPG  VA R+
Sbjct: 123 YGMDFYVVMDRPGMRVARRK 142


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +1

Query: 214 GLLVSVVMKRLLSMYSPRAKAEEILRXFKVREYELRRDNFS 336
           G + SV ++ L+  YS  +K ++I+  FK + YE+ RD+ S
Sbjct: 582 GRITSVTLETLVEKYSELSK-QQIVEWFKSKLYEILRDSAS 621


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 220 LVSVVMKRLLSMYSPRAKAEEILRXFKVREYELRRDN 330
           +V+++ + L +    R + E +L   K  EYE +RDN
Sbjct: 47  IVNIIYRLLRATDEERLEKESLLDAIKNNEYEKQRDN 83


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 260 LYMDSNLFITTDTKRPHCIPSLGKYRLFPVSCSNTLAARVSLSPDS 123
           L +D NL   T +   + I     Y +F   CS+TL   VS+SP S
Sbjct: 311 LSIDINLIGKTGSSLGNLILPCYPYIVFCGDCSDTLVYDVSVSPMS 356


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 474 TPSVCNVETWPAKYDVKVQSINSN*GIVLDTQVNVFLNTEAKITRGGEVV 325
           TPSVC   T+    D    +     GI L T +++F +   K  R  +VV
Sbjct: 612 TPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLSMFKHVSTKALRLDDVV 661


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,335
Number of Sequences: 5004
Number of extensions: 39271
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)