Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20021
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 149 2e-36
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 148 2e-36
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 102 1e-22
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 86 2e-17
02_02_0196 + 7685933-7685961,7686086-7686284 49 2e-06
01_07_0141 - 41390483-41391448 28 3.4
03_06_0675 + 35455968-35455970,35456314-35456379,35456513-354565... 27 5.9
07_01_1047 + 9161305-9161709,9162307-9162444,9162682-9162971,916... 27 7.8
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 149 bits (360), Expect = 2e-36
Identities = 81/143 (56%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Frame = +1
Query: 52 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSV 231
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+G S F +
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 232 VMKRLLSMYSPRA-KAEEILRX-FKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSI 405
+++ + R KA ++L KV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS
Sbjct: 63 RNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPST 122
Query: 406 GIYGLDFYVVLCRPGFNVAHRRR 474
GIYG+DFYVVL R G+ VA RRR
Sbjct: 123 GIYGMDFYVVLERAGYRVARRRR 145
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 148 bits (359), Expect = 2e-36
Identities = 81/143 (56%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Frame = +1
Query: 52 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSV 231
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+G S F +
Sbjct: 3 SEKKQANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 232 VMKRLLSMYSPRA-KAEEILRX-FKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSI 405
+++ + R KA ++L KV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS
Sbjct: 63 RNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPST 122
Query: 406 GIYGLDFYVVLCRPGFNVAHRRR 474
GIYG+DFYVVL R G+ VA RRR
Sbjct: 123 GIYGMDFYVVLERAGYRVARRRR 145
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 102 bits (245), Expect = 1e-22
Identities = 59/115 (51%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Frame = +1
Query: 52 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSV 231
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+G + F +
Sbjct: 29 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 88
Query: 232 VMKRLLSMYSPRA-KAEEILR-XFKVREYELRRDNFSATGNFGFGIQEHIDLGIK 390
+++ + R KA ++L KV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 89 RNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 85.8 bits (203), Expect = 2e-17
Identities = 58/144 (40%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Frame = +1
Query: 52 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGNSLYFPRLGIQCGLLVSV 231
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+G S F + +
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSF-GI 61
Query: 232 VMKRLLSMYSPRAKAEEILRXFKVREYELR-RDNF--SATGNFGFGIQEHIDLGIKYDPS 402
++ Y + E+ ++ + +R DN S T + + +YDPS
Sbjct: 62 RRNEKIACY-VTVRGEKAMQLLESGLKIIRIVDNLIPSVTRSTRAKRINLSNQCFRYDPS 120
Query: 403 IGIYGLDFYVVLCRPGFNVAHRRR 474
GIYG+DFYVVL R G+ VA RRR
Sbjct: 121 TGIYGMDFYVVLERAGYRVARRRR 144
Score = 52.0 bits (119), Expect = 2e-07
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +3
Query: 177 KQPVFSKARYTVRSFGIRRNEKIAVHVQSEG 269
+ PVFSKARYTVRSFGIRRNEKIA +V G
Sbjct: 45 QSPVFSKARYTVRSFGIRRNEKIACYVTVRG 75
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +1
Query: 391 YDPSIGIYGLDFYVVLCRPGFNVAHRRR 474
YDPS GIYG+DFYVVL R G+ VA RRR
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRR 38
>01_07_0141 - 41390483-41391448
Length = 321
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 106 LNICVGESGDRLTRAAKVLEQLTGNSLYFPRL 201
+ +C G SGD L A+KV E L N RL
Sbjct: 10 VGVCWGMSGDNLPPASKVTEMLRENGFTVVRL 41
>03_06_0675 +
35455968-35455970,35456314-35456379,35456513-35456565,
35457142-35457169,35457837-35457911,35458020-35458124,
35458278-35458367,35458454-35458543
Length = 169
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 148 AAKVLEQLTGNSLYFPRLGIQCGLLVSVVMKRLLSMYSPRAKAEEILRXFKVREYEL 318
A K L + + NS+ Q L +++ K+ L S RA+A ++LR V+ Y++
Sbjct: 58 AEKCLIETSINSIRISMKVKQADELENILAKKFLRFLSMRAEAFQVLRRKPVQGYDI 114
>07_01_1047 +
9161305-9161709,9162307-9162444,9162682-9162971,
9163477-9163759,9163839-9163952
Length = 409
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 223 PKDRTVYLALENTGCFL*VAPTP 155
PKD+ VY +E T C L V TP
Sbjct: 126 PKDQAVYQKIEPTSCTLVVRVTP 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,449,966
Number of Sequences: 37544
Number of extensions: 251747
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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