Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20019
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...   150   9e-39
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       28   0.059
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.96 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   6.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score =  150 bits (364), Expect = 9e-39
 Identities = 94/200 (47%), Positives = 125/200 (62%), Gaps = 11/200 (5%)
 Frame = +2

Query: 8   RLLARVVRAHLDTCEFTRDRVASMRARARDCPTYS--QPTLACPLNPAPE-LQSEKE--- 169
           RLLA VV+AHLDTC+FTRD+VA +  RAR+ P Y+   PTLACPLNP P+ L  ++E   
Sbjct: 177 RLLATVVQAHLDTCDFTRDKVAPILVRARETPNYTACPPTLACPLNPNPQPLTGQQELLQ 236

Query: 170 -FSQRFAHVIRGVIDFAGLIPGFQLLTQDEIHAAQKWSV--RCIVRATHLYV*RSS**YH 340
            FS+RF+  IRGV++FA  IPGF LL QD+     K  V    +VR   ++  +++    
Sbjct: 237 DFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMIC 296

Query: 341 LSQWATDEERLHPERCQCKFLVDSTFKFAERMNSMNLTDAEIGLFW--XXXXXXRIGLLR 514
           L+      E +H      +FL+DS F FAER+NS+ L+DAE+GLF         R G LR
Sbjct: 297 LNGQVLKRESIH-NSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPG-LR 354

Query: 515 NIELVERMHSRLRRACKLSL 574
           N ELVERMH++LR A +  L
Sbjct: 355 NTELVERMHNKLRNALQTVL 374



 Score = 69.7 bits (163), Expect = 2e-14
 Identities = 30/47 (63%), Positives = 39/47 (82%)
 Frame = +3

Query: 261 TLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANASF 401
           TLLK+G+F+ L VRL CMFDA  NS+ICLNGQ++KR+SI + +NA F
Sbjct: 269 TLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARF 315


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 28.3 bits (60), Expect = 0.059
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 45  RASSRVIASLPCEPELVTVPPTRSL 119
           R+   V+ S  CEP++V V PTR L
Sbjct: 261 RSVDLVVTSTYCEPQVVIVSPTREL 285


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 255 KFTLLKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDS 374
           +  LLK+   + + +R+   +D   +SII  N Q   +DS
Sbjct: 407 QIALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTKDS 446


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 93  VTVPPTRSLLWLAH*TRRQSCSLKRNF 173
           V V  T  ++WL+H   R SC +   F
Sbjct: 111 VIVSHTGEVVWLSHGIFRSSCDIDVEF 137


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 319 SNIQMSRTNNASNRPLLSSVNFI 251
           SNI     NN  N+ L  ++N+I
Sbjct: 91  SNISNYNNNNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 319 SNIQMSRTNNASNRPLLSSVNFI 251
           SNI     NN  N+ L  ++N+I
Sbjct: 329 SNISNYNNNNNYNKKLYYNINYI 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,925
Number of Sequences: 438
Number of extensions: 3138
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)