BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20019 (587 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 32 0.25 At3g30710.1 68416.m03897 hypothetical protein similar to Arginin... 31 0.75 At5g49540.1 68418.m06131 expressed protein contains Pfam profile... 27 7.0 At3g18770.1 68416.m02382 expressed protein 27 7.0 At1g15180.1 68414.m01815 MATE efflux family protein contains Pfa... 27 7.0 At5g26850.1 68418.m03203 expressed protein 27 9.3 >At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 477 Score = 32.3 bits (70), Expect = 0.25 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 504 PIRSDEDYSQKSPISASVKFMEFIRSANLKVESTRNLHW-HRSGWSLSSSV 355 P+RSD+ ++K P +V + S + E+ N W H+SGW + V Sbjct: 135 PVRSDKQRNKKGPSRLNVPTSYTVASVMKECETLLNRLWSHKSGWPFRTPV 185 >At3g30710.1 68416.m03897 hypothetical protein similar to Arginine-tRNA-protein transferase 1 (EC 2.3.2.8)(R-transferase 1) (Arginyltransferase 1) (Arginyl-tRNA--protein transferase 1)(SP:Q9Z2A5) {Mus musculus}; similar to MRP homologs in mycobacteria (SP:P53382), which belong to the MR?/NBP35 family of ATP-binding proteins. Length = 523 Score = 30.7 bits (66), Expect = 0.75 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +2 Query: 11 LLARVVRAHLDTCEFTRDRVASMRARARDCPTYSQPTL-ACPLNPAPELQ 157 LL ++R +D F RDR+ + A A P + PT+ P+ P++Q Sbjct: 228 LLTLLLRGQIDWATFNRDRIKTALAVATTGPVIALPTVQRDPIEEVPQVQ 277 >At5g49540.1 68418.m06131 expressed protein contains Pfam profile PF05646: Protein of unknown function (DUF786) Length = 114 Score = 27.5 bits (58), Expect = 7.0 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +2 Query: 95 DCPTYSQPTLACPLNPAPELQSEKEFSQRFAHVIRGVIDFAGLIPGF 235 D PT+S L N +Q+ + F A V+ G+I F GLI GF Sbjct: 14 DIPTFSAENLQ---NNLKVIQNSRTFLSIIAGVLAGIIGFNGLI-GF 56 >At3g18770.1 68416.m02382 expressed protein Length = 625 Score = 27.5 bits (58), Expect = 7.0 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -3 Query: 228 GMRPAKSITPRITWAKRCENSFSD 157 G+RP+ S +PRI++++ SF D Sbjct: 457 GVRPSSSSSPRISFSRSSSRSFQD 480 >At1g15180.1 68414.m01815 MATE efflux family protein contains Pfam profile PF01554: Uncharacterized membrane protein family Length = 482 Score = 27.5 bits (58), Expect = 7.0 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = +3 Query: 267 LKSGLFDALFVRLICMFDAPLNSIICLNGQLMKRDSIQSGANASFSLI---LLSSLRNV 434 L+ GLF A RLIC F AP+ +++ L + G + SL L SS NV Sbjct: 27 LRDGLFTAELKRLIC-FAAPMAAVVIAQFMLQIISMVMVGHLGNLSLASASLASSFCNV 84 >At5g26850.1 68418.m03203 expressed protein Length = 919 Score = 27.1 bits (57), Expect = 9.3 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = +1 Query: 268 SKVVCSMHCSCDSSVCLTLLLIVSSVSMGN**RETPSRAVPMQVSR*FYFQVCGTY 435 +K++C HC + T LL V + + N ++TP+ ++R Y QV GTY Sbjct: 99 NKMLC--HCKDQMAYFATSLLNVVTELLDNSKQDTPTILGCQTLTRFIYSQVDGTY 152 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,374,218 Number of Sequences: 28952 Number of extensions: 243630 Number of successful extensions: 719 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 700 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 719 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1161268208 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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