Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20018
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561... 45 5e-05
04_03_0664 + 18501248-18502802,18503370-18505054 31 1.1
08_02_1557 + 27867977-27869134 30 1.5
11_01_0477 - 3688357-3690042 29 3.5
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 28 6.0
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 28 6.0
07_01_0305 - 2181727-2184793,2185635-2185945 28 8.0
02_03_0091 + 15112390-15112396,15113469-15113962 28 8.0
01_01_1101 + 8731427-8732938 28 8.0
>07_03_0413 +
17854787-17854847,17855362-17855606,17856127-17856189,
17856276-17856294,17856547-17856645,17856725-17856802,
17856891-17857135,17857796-17857952,17858161-17858303
Length = 369
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +3
Query: 267 GVA-LPIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQ 443
GVA +FGVP++ +V+R + +PLV+ DYL GL ++ ++++E +K QQ
Sbjct: 124 GVASTDVFGVPIEATVQREQ--SGKAVPLVLVRCADYLVISGLSNEYLFKSEGEKKVLQQ 181
Query: 444 LRKLFT-DRGPTFP 482
L L+ D G FP
Sbjct: 182 LVSLYNEDSGAPFP 195
>04_03_0664 + 18501248-18502802,18503370-18505054
Length = 1079
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 251 KNFHIGSCAPYIRCTTATVCGALSL 325
K H+GSC Y C ++CG SL
Sbjct: 827 KKLHVGSCGTYETCLVNSLCGLTSL 851
>08_02_1557 + 27867977-27869134
Length = 385
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 284 YRERNSQCENSSKGTPDVTVDG 219
YR R S C++S+ +P VT+DG
Sbjct: 226 YRARQSSCKSSAASSPAVTIDG 247
>11_01_0477 - 3688357-3690042
Length = 561
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 396 ILIRVPVSNRCCLGRPAADRCRHGN 322
+L V VS RCC GR A +C H +
Sbjct: 295 VLKLVDVSPRCCCGRRGATQCDHSS 319
>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 578 EQATAIAE-PQREATMTNLIISCRTVTTSAGLADETF 685
E+ + +AE P RE+T L I C T+ GL ++ F
Sbjct: 1071 ERNSKLAEFPSRESTQEKLFICCARCKTALGLQEDGF 1107
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 358 RTTSGRPVSSWQRERSTDCCSGTPNIG-SATPNVKILQKEHQMSPLTVFSS 209
R SGR + DC GT G SA P K + SP+T+FSS
Sbjct: 46 RDGSGRFARDKLNDDFCDCPDGTDEPGTSACPEGKFYCQNAGHSPITIFSS 96
>07_01_0305 - 2181727-2184793,2185635-2185945
Length = 1125
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 494 RSCRLAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLIISCRTVTTSAGLA 673
+S L MLK +S TQ+ + Q E+ + + P+ +MTNL + C V +G+
Sbjct: 791 KSLVLPMLKHLLSGY-----TQQQNEQTEKFSTVRMPRGIGSMTNLQVLCHVVV--SGIE 843
Query: 674 DE 679
DE
Sbjct: 844 DE 845
>02_03_0091 + 15112390-15112396,15113469-15113962
Length = 166
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 294 PLQQSVERSRCHDDTGLPLVVRDSI 368
PL + + HDDTG PL++ D +
Sbjct: 132 PLPSDLSYAFLHDDTGSPLIISDKL 156
>01_01_1101 + 8731427-8732938
Length = 503
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 551 LTQELHGQFEQATAIAEPQREATMTNLIISCRTVTTSAGLADET 682
L +LH +A A+P A++ SC +V ++ + DET
Sbjct: 93 LAAQLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDET 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,648
Number of Sequences: 37544
Number of extensions: 287383
Number of successful extensions: 916
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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