Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20018
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81130-4|CAB03414.2| 512|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 36 0.036
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 36 0.036
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 36 0.036
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 36 0.036
AC024755-8|AAF59636.2| 604|Caenorhabditis elegans Hypothetical ... 31 0.77
Z81068-1|CAB02982.1| 232|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z66521-14|CAI70416.1| 245|Caenorhabditis elegans Hypothetical p... 29 2.4
Z66521-13|CAA91403.1| 444|Caenorhabditis elegans Hypothetical p... 29 2.4
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 29 4.1
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 29 4.1
U80955-10|AAN65297.2| 475|Caenorhabditis elegans Hypothetical p... 27 9.5
U80955-9|AAN65296.1| 863|Caenorhabditis elegans Hypothetical pr... 27 9.5
U80955-8|AAN65295.1| 881|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +3
Query: 282 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLF 458
IFGVPL+ +E H + +PL++ SID LQ GL++K IYRT K K +++ F
Sbjct: 176 IFGVPLKGLLE----HQNRHIPLIIEKSIDQLQRRGLRAKGIYRTCGVKSKIEEICNAF 230
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +3
Query: 282 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLF 458
IFGVPL+ +E H + +PL++ SID LQ GL++K IYRT K K +++ F
Sbjct: 405 IFGVPLKGLLE----HQNRHIPLIIEKSIDQLQRRGLRAKGIYRTCGVKSKIEEICNAF 459
>Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +3
Query: 282 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLF 458
IFGVPL+ +E H + +PL++ SID LQ GL++K IYRT K K +++ F
Sbjct: 176 IFGVPLKGLLE----HQNRHIPLIIEKSIDQLQRRGLRAKGIYRTCGVKSKIEEICNAF 230
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +3
Query: 282 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLF 458
IFGVPL+ +E H + +PL++ SID LQ GL++K IYRT K K +++ F
Sbjct: 405 IFGVPLKGLLE----HQNRHIPLIIEKSIDQLQRRGLRAKGIYRTCGVKSKIEEICNAF 459
>Z81130-4|CAB03414.2| 512|Caenorhabditis elegans Hypothetical
protein T23G11.5 protein.
Length = 512
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 282 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRK 452
+ G+PL +SV D LP R +ID+++ +GL ++ IYR P K + +L +
Sbjct: 52 VLGLPLTESVSADPSLDGIPLPSFFRYAIDFVEENGLCTEGIYRLSPPKSRLDELER 108
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2
Query: 512 MLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLII 637
++K F+ ELPE +++ ++HG +A ++A P T +L++
Sbjct: 563 LIKDFLRELPEPLISPQIHGMLLEAASVALPNDVQTNRHLVL 604
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2
Query: 512 MLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLII 637
++K F+ ELPE +++ ++HG +A ++A P T +L++
Sbjct: 761 LIKDFLRELPEPLISPQIHGMLLEAASVALPNDVQTNRHLVL 802
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2
Query: 512 MLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLII 637
++K F+ ELPE +++ ++HG +A ++A P T +L++
Sbjct: 829 LIKDFLRELPEPLISPQIHGMLLEAASVALPNDVQTNRHLVL 870
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 35.5 bits (78), Expect = 0.036
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2
Query: 512 MLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLII 637
++K F+ ELPE +++ ++HG +A ++A P T +L++
Sbjct: 761 LIKDFLRELPEPLISPQIHGMLLEAASVALPNDVQTNRHLVL 802
>AC024755-8|AAF59636.2| 604|Caenorhabditis elegans Hypothetical
protein Y34B4A.8 protein.
Length = 604
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 252 RIFTLGVALPIFGVPLQQ--SVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPD 425
R+ + P+FGVPL + S+++ R V+ D+L+ +G+ + I+R +
Sbjct: 228 RMIATALPRPVFGVPLDEHLSIQKERISG------VLTKCCDFLRQNGMNERGIFRVSGN 281
Query: 426 KIKFQQLR 449
K +++R
Sbjct: 282 ASKIKRIR 289
>Z81068-1|CAB02982.1| 232|Caenorhabditis elegans Hypothetical
protein F25H5.2 protein.
Length = 232
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 538 PGIDTNTRAARSVRTSHRYS--RTSAGSDDDEPHHKLPNCNHI 660
PG DTN + +T +R+S R +GSD + P H N ++
Sbjct: 85 PGTDTNATLCCNPQTPYRHSLGRIVSGSDKNSPGHVSGNFGYV 127
>Z66521-14|CAI70416.1| 245|Caenorhabditis elegans Hypothetical
protein W02B12.8b protein.
Length = 245
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 285 FGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYR 413
FGVPL+ + H +P +V I+YL+AH L + ++R
Sbjct: 48 FGVPLEFILS----HCGGNIPPIVDQLIEYLEAHALTMEGVFR 86
>Z66521-13|CAA91403.1| 444|Caenorhabditis elegans Hypothetical
protein W02B12.8a protein.
Length = 444
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 285 FGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYR 413
FGVPL+ + H +P +V I+YL+AH L + ++R
Sbjct: 247 FGVPLEFILS----HCGGNIPPIVDQLIEYLEAHALTMEGVFR 285
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 267 GVALPIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQL 446
G P+ GV + S C D +P++V+ + ++ +G+ + IYR + L
Sbjct: 774 GAPQPVLGVRIADCPTGS-CEDH--VPMIVQACVCVIETYGMDTVGIYRIPGNTAAVNAL 830
Query: 447 RKLFTDRG 470
++ ++RG
Sbjct: 831 KESLSNRG 838
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 267 GVALPIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQL 446
G P+ GV + S C D +P++V+ + ++ +G+ + IYR + L
Sbjct: 652 GAPQPVLGVRIADCPTGS-CEDH--VPMIVQACVCVIETYGMDTVGIYRIPGNTAAVNAL 708
Query: 447 RKLFTDRG 470
++ ++RG
Sbjct: 709 KESLSNRG 716
>U80955-10|AAN65297.2| 475|Caenorhabditis elegans Hypothetical
protein T04C9.1c protein.
Length = 475
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 515 LKAFISELPESILTQELHGQFEQATAIAE 601
+K F+ LPE ++T ELH F A + +
Sbjct: 135 VKTFLRNLPEPLMTFELHNVFINAAKMGD 163
>U80955-9|AAN65296.1| 863|Caenorhabditis elegans Hypothetical
protein T04C9.1b protein.
Length = 863
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 515 LKAFISELPESILTQELHGQFEQATAIAE 601
+K F+ LPE ++T ELH F A + +
Sbjct: 475 VKTFLRNLPEPLMTFELHNVFINAAKMGD 503
>U80955-8|AAN65295.1| 881|Caenorhabditis elegans Hypothetical
protein T04C9.1a protein.
Length = 881
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 515 LKAFISELPESILTQELHGQFEQATAIAE 601
+K F+ LPE ++T ELH F A + +
Sbjct: 475 VKTFLRNLPEPLMTFELHNVFINAAKMGD 503
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,018,240
Number of Sequences: 27780
Number of extensions: 242514
Number of successful extensions: 718
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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