Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20018
(688 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.6
L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 23 2.1
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 21 8.3
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 8.3
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 8.3
AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alph... 21 8.3
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 479 PVSLGRSCRLAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLIIS 640
P+S GR A ++ + LP S + +ELH ++ I + ++A ++ IIS
Sbjct: 373 PISTGRP---ATVEDTSASLPLSGMQEELHTILKELRFITDRMKKADESDEIIS 423
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 479 PVSLGRSCRLAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLIIS 640
P+S GR A ++ + LP S + +ELH ++ I + ++A ++ IIS
Sbjct: 373 PISTGRP---ATVEDTSASLPLSGMQEELHTILKELRFITDRMKKADESDEIIS 423
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 479 PVSLGRSCRLAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLIIS 640
P+S GR A ++ + LP S + +ELH ++ I + ++A ++ IIS
Sbjct: 373 PISTGRP---ATVEDTSASLPLSGMQEELHTILKELRFITDRMKKADESDEIIS 423
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 479 PVSLGRSCRLAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLIIS 640
P+S GR A ++ + LP S + +ELH ++ I + ++A ++ IIS
Sbjct: 373 PISTGRP---ATVEDTSASLPLSGMQEELHTILKELRFITDRMKKADESDEIIS 423
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 479 PVSLGRSCRLAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLIIS 640
P+S GR A ++ + LP S + +ELH ++ I + ++A ++ IIS
Sbjct: 373 PISTGRP---ATVEDTSASLPLSGMQEELHTILKELRFITDRMKKADESDEIIS 423
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 479 PVSLGRSCRLAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLIIS 640
P+S GR A ++ + LP S + +ELH ++ I + ++A ++ IIS
Sbjct: 373 PISTGRP---ATVEDTSASLPLSGMQEELHTILKELRFITDRMKKADESDEIIS 423
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 479 PVSLGRSCRLAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLIIS 640
P+S GR A ++ + LP S + +ELH ++ I + ++A ++ IIS
Sbjct: 441 PISTGRP---ATVEDTSASLPLSGMQEELHTILKELRFITDRMKKADESDEIIS 491
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 479 PVSLGRSCRLAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLIIS 640
P+S GR A ++ + LP S + +ELH ++ I + ++A ++ IIS
Sbjct: 441 PISTGRP---ATVEDTSASLPLSGMQEELHTILKELRFITDRMKKADESDEIIS 491
>L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein.
Length = 382
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 343 RPVSSWQRERSTDCCSGTPNIGSATPNVKILQKEHQMS 230
RP ++W C + TPN SA +Q+ +MS
Sbjct: 208 RPAANWGYYAYPYCYNLTPNQPSAQCEATTMQENDKMS 245
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 21.4 bits (43), Expect = 8.3
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -1
Query: 151 WTFPYLC 131
W FPYLC
Sbjct: 5 WRFPYLC 11
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 8.3
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -1
Query: 151 WTFPYLC 131
W FPYLC
Sbjct: 43 WRFPYLC 49
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 8.3
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -1
Query: 151 WTFPYLC 131
W FPYLC
Sbjct: 96 WRFPYLC 102
>AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alpha
protein precursor protein.
Length = 153
Score = 21.4 bits (43), Expect = 8.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 328 WQRERSTDCC 299
WQ ERS CC
Sbjct: 69 WQMERSCMCC 78
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,285
Number of Sequences: 438
Number of extensions: 3069
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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