Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20015
(627 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4SLB2 Cluster: Chromosome 7 SCAF14557, whole genome sh... 79 1e-13
UniRef50_Q9Y3B8 Cluster: Oligoribonuclease, mitochondrial precur... 78 2e-13
UniRef50_Q17819 Cluster: Probable oligoribonuclease; n=2; Caenor... 73 6e-12
UniRef50_Q16XI3 Cluster: Oligoribonuclease, mitochondrial; n=2; ... 72 1e-11
UniRef50_Q9VCI0 Cluster: Probable oligoribonuclease; n=2; Sophop... 68 2e-10
UniRef50_Q9ZVE0 Cluster: Oligoribonuclease; n=8; Magnoliophyta|R... 62 1e-08
UniRef50_UPI00005A0A92 Cluster: PREDICTED: similar to small frag... 61 2e-08
UniRef50_Q8FMX9 Cluster: Oligoribonuclease; n=6; Actinomycetales... 61 2e-08
UniRef50_Q8ZIW9 Cluster: Oligoribonuclease; n=182; Bacteria|Rep:... 60 4e-08
UniRef50_Q5Z0A9 Cluster: Oligoribonuclease; n=36; Actinobacteria... 60 6e-08
UniRef50_UPI00015B5C15 Cluster: PREDICTED: similar to ENSANGP000... 59 7e-08
UniRef50_Q4P645 Cluster: Putative uncharacterized protein; n=2; ... 59 7e-08
UniRef50_UPI00015B53D6 Cluster: PREDICTED: similar to ENSANGP000... 57 3e-07
UniRef50_UPI0000DB7BA5 Cluster: PREDICTED: similar to Probable o... 56 5e-07
UniRef50_Q22ZB0 Cluster: Exonuclease family protein; n=1; Tetrah... 56 7e-07
UniRef50_Q5KPH7 Cluster: Oligoribonuclease, putative; n=2; Filob... 56 9e-07
UniRef50_Q62M61 Cluster: Oligoribonuclease; n=90; Bacteria|Rep: ... 56 9e-07
UniRef50_Q6BKE6 Cluster: Similar to CA4537|CaYNT2 Candida albica... 53 6e-06
UniRef50_Q8G3N5 Cluster: Oligoribonuclease; n=4; Bifidobacterium... 52 1e-05
UniRef50_A2XRP8 Cluster: Putative uncharacterized protein; n=2; ... 50 5e-05
UniRef50_A5E684 Cluster: Oligoribonuclease, mitochondrial; n=1; ... 50 5e-05
UniRef50_Q056X5 Cluster: Oligoribonuclease; n=1; Buchnera aphidi... 49 8e-05
UniRef50_Q8B5Y0 Cluster: Putative oligoribonuclease; n=1; Diacha... 48 1e-04
UniRef50_A5KRR8 Cluster: Oligoribonuclease; n=1; candidate divis... 48 1e-04
UniRef50_O94626 Cluster: Probable oligoribonuclease; n=5; Ascomy... 48 1e-04
UniRef50_Q2HAN9 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_P54964 Cluster: Oligoribonuclease, mitochondrial precur... 47 3e-04
UniRef50_A7BDJ9 Cluster: Putative uncharacterized protein; n=1; ... 45 0.001
UniRef50_A0E2M4 Cluster: Chromosome undetermined scaffold_75, wh... 45 0.001
UniRef50_A4QVJ0 Cluster: Putative uncharacterized protein; n=2; ... 45 0.001
UniRef50_Q6MNB4 Cluster: Oligoribonuclease; n=1; Bdellovibrio ba... 44 0.002
UniRef50_A6DMP4 Cluster: Oligoribonuclease; n=1; Lentisphaera ar... 44 0.002
UniRef50_Q83GA7 Cluster: Oligoribonuclease; n=5; Actinomycetales... 44 0.002
UniRef50_Q097T4 Cluster: Oligoribonuclease; n=2; Cystobacterinea... 40 0.037
UniRef50_Q8QNE0 Cluster: EsV-1-139; n=1; Ectocarpus siliculosus ... 38 0.20
UniRef50_Q6XM84 Cluster: FirrV-1-A3; n=1; Feldmannia irregularis... 36 0.79
UniRef50_A6Q2C7 Cluster: DNA polymerase III, epsilon subunit; n=... 35 1.4
UniRef50_A2BVT4 Cluster: Possible DNA polymerase III, epsilon su... 35 1.8
UniRef50_A0BKH9 Cluster: Chromosome undetermined scaffold_112, w... 34 2.4
UniRef50_Q8WW27 Cluster: Putative C->U-editing enzyme APOBEC-4; ... 34 2.4
UniRef50_Q6FBS1 Cluster: Putative uncharacterized protein; n=2; ... 33 4.2
UniRef50_A6DIP6 Cluster: Exonuclease; n=1; Lentisphaera araneosa... 33 4.2
UniRef50_A5KMD9 Cluster: Putative uncharacterized protein; n=1; ... 33 5.6
UniRef50_Q2AKQ0 Cluster: Exonuclease; n=1; Bacillus weihenstepha... 33 7.4
UniRef50_Q66283 Cluster: ORF 1; n=2; Cassava vein mosaic virus|R... 32 9.8
UniRef50_Q4IVU2 Cluster: DNA polymerase III, epsilon subunit; n=... 32 9.8
UniRef50_Q193G0 Cluster: DnaQ family exonuclease/DinG family hel... 32 9.8
UniRef50_A1TZ29 Cluster: DNA polymerase III, epsilon subunit; n=... 32 9.8
UniRef50_A5APD5 Cluster: Putative uncharacterized protein; n=1; ... 32 9.8
UniRef50_Q0CUJ2 Cluster: Putative uncharacterized protein; n=2; ... 32 9.8
>UniRef50_Q4SLB2 Cluster: Chromosome 7 SCAF14557, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 7 SCAF14557, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 248
Score = 78.6 bits (185), Expect = 1e-13
Identities = 32/67 (47%), Positives = 51/67 (76%)
Frame = +3
Query: 345 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVR 524
++QR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++IN P+ L+ + +
Sbjct: 2 MSQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDGMSEWCK 61
Query: 525 SNTARQG 545
+ + G
Sbjct: 62 EHHGKSG 68
Score = 40.7 bits (91), Expect = 0.028
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNH 622
+ WCK HG++GLT+A S +L +AE L FV H
Sbjct: 57 SEWCKEHHGKSGLTQAVRNSKITLEQAEYEFLSFVRQH 94
>UniRef50_Q9Y3B8 Cluster: Oligoribonuclease, mitochondrial
precursor; n=37; cellular organisms|Rep:
Oligoribonuclease, mitochondrial precursor - Homo
sapiens (Human)
Length = 237
Score = 78.2 bits (184), Expect = 2e-13
Identities = 32/67 (47%), Positives = 50/67 (74%)
Frame = +3
Query: 345 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVR 524
+AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I P+ L+ + +
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 525 SNTARQG 545
+ + G
Sbjct: 99 EHHGKSG 105
Score = 38.3 bits (85), Expect = 0.15
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFV 613
++WCK HG++GLT+A +S +L +AE L FV
Sbjct: 94 SDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFV 128
>UniRef50_Q17819 Cluster: Probable oligoribonuclease; n=2;
Caenorhabditis|Rep: Probable oligoribonuclease -
Caenorhabditis elegans
Length = 193
Score = 72.9 bits (171), Expect = 6e-12
Identities = 31/55 (56%), Positives = 43/55 (78%)
Frame = +3
Query: 345 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKI 509
I QRI+W+D EMTGLD+E + EIA +VTD++LN +ATGPDIVI+ P+ L+ +
Sbjct: 11 IEQRIIWIDCEMTGLDVEKQTLCEIALIVTDSELNTIATGPDIVIHQPKEVLDNM 65
>UniRef50_Q16XI3 Cluster: Oligoribonuclease, mitochondrial; n=2;
Aedes aegypti|Rep: Oligoribonuclease, mitochondrial -
Aedes aegypti (Yellowfever mosquito)
Length = 210
Score = 71.7 bits (168), Expect = 1e-11
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = +3
Query: 357 IVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVRSNTA 536
+VW+DLEMTGL++E D I+EIAC++T+ L ++ GPDIVI+ PE LN + ++N +
Sbjct: 36 LVWIDLEMTGLEVEKDRILEIACVITNKNLEILERGPDIVIHEPEEVLNAMNEWCQTNHS 95
Query: 537 RQG 545
+ G
Sbjct: 96 KTG 98
Score = 39.9 bits (89), Expect = 0.049
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNH 622
N WC+ H +TGL +A +S L +AE+++L FV +
Sbjct: 87 NEWCQTNHSKTGLIQAVRESKIDLQKAEQMVLDFVKKY 124
>UniRef50_Q9VCI0 Cluster: Probable oligoribonuclease; n=2;
Sophophora|Rep: Probable oligoribonuclease - Drosophila
melanogaster (Fruit fly)
Length = 211
Score = 68.1 bits (159), Expect = 2e-10
Identities = 29/45 (64%), Positives = 35/45 (77%)
Frame = +3
Query: 357 IVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPE 491
IVWMDLEMTGLDIE D I+E+AC++TD LNV + GP IN P+
Sbjct: 38 IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQ 82
>UniRef50_Q9ZVE0 Cluster: Oligoribonuclease; n=8; Magnoliophyta|Rep:
Oligoribonuclease - Arabidopsis thaliana (Mouse-ear
cress)
Length = 222
Score = 61.7 bits (143), Expect = 1e-08
Identities = 26/56 (46%), Positives = 39/56 (69%)
Frame = +3
Query: 342 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKI 509
D Q +VW+DLEMTGL++E D I+EIAC++T+ L GPD+V+ + L+K+
Sbjct: 41 DYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKM 96
Score = 40.7 bits (91), Expect = 0.028
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNHV 625
++WC+ HG +GLT+ L S + EAE+ +++FV HV
Sbjct: 97 DDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHV 135
>UniRef50_UPI00005A0A92 Cluster: PREDICTED: similar to small
fragment nuclease (predicted); n=1; Canis lupus
familiaris|Rep: PREDICTED: similar to small fragment
nuclease (predicted) - Canis familiaris
Length = 161
Score = 61.3 bits (142), Expect = 2e-08
Identities = 24/47 (51%), Positives = 38/47 (80%)
Frame = +3
Query: 369 DLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKI 509
+L+MTGLDIE D I+E+ACL+TD+ LN++A GP+++I P+ L+ +
Sbjct: 70 ELQMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSM 116
>UniRef50_Q8FMX9 Cluster: Oligoribonuclease; n=6;
Actinomycetales|Rep: Oligoribonuclease - Corynebacterium
efficiens
Length = 221
Score = 61.3 bits (142), Expect = 2e-08
Identities = 26/52 (50%), Positives = 39/52 (75%)
Frame = +3
Query: 354 RIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKI 509
R+VW+DLEMTGLD+E I+E+A LVTDA LN++ G D+V++ + L ++
Sbjct: 20 RLVWVDLEMTGLDLERHVIVEVAALVTDANLNILGEGVDLVVHATDEELARM 71
>UniRef50_Q8ZIW9 Cluster: Oligoribonuclease; n=182; Bacteria|Rep:
Oligoribonuclease - Yersinia pestis
Length = 181
Score = 60.1 bits (139), Expect = 4e-08
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +3
Query: 357 IVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVIN 482
++W+DLEMTGLD E D I+EIA LVTDA LN++A GP + ++
Sbjct: 8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVH 49
>UniRef50_Q5Z0A9 Cluster: Oligoribonuclease; n=36; Actinobacteria
(class)|Rep: Oligoribonuclease - Nocardia farcinica
Length = 216
Score = 59.7 bits (138), Expect = 6e-08
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +3
Query: 357 IVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVRSNTA 536
+VWMD EMTGL +++D ++E++ LVTD+ LN++ G DIVI+ + L + V A
Sbjct: 6 VVWMDCEMTGLRLDSDKLIEVSALVTDSDLNILGDGVDIVIHADDAALAAMPPVVAEMHA 65
Query: 537 RQG 545
R G
Sbjct: 66 RSG 68
>UniRef50_UPI00015B5C15 Cluster: PREDICTED: similar to
ENSANGP00000010833; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000010833 - Nasonia
vitripennis
Length = 224
Score = 59.3 bits (137), Expect = 7e-08
Identities = 25/63 (39%), Positives = 42/63 (66%)
Frame = +3
Query: 357 IVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVRSNTA 536
IVW+D+EM+GLD++ + I+EIACL+TD LNV++ V+ P+ L+ + ++N
Sbjct: 46 IVWIDMEMSGLDVDKNRILEIACLITDENLNVISDEFQAVLYQPDTELDTMNDWCQNNHG 105
Query: 537 RQG 545
+ G
Sbjct: 106 KTG 108
Score = 35.9 bits (79), Expect = 0.79
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNHV 625
N+WC+ HG+TGL +AC KS + + +L F+ ++
Sbjct: 97 NDWCQNNHGKTGLIDACKKSAETEDAVDINLLYFMMKYI 135
>UniRef50_Q4P645 Cluster: Putative uncharacterized protein; n=2;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 606
Score = 59.3 bits (137), Expect = 7e-08
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = +3
Query: 357 IVWMDLEMTGLDIEN-DHIMEIACLVTDAQLNVVATGPDIVINLPEVTLN 503
+VW+D EMTGL +EN D ++EIAC++TD QLN + +G VI+ P+ L+
Sbjct: 423 LVWIDCEMTGLSVENGDRLLEIACIITDGQLNPIDSGVSYVISTPQSVLD 472
>UniRef50_UPI00015B53D6 Cluster: PREDICTED: similar to
ENSANGP00000010833; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000010833 - Nasonia
vitripennis
Length = 185
Score = 57.2 bits (132), Expect = 3e-07
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = +3
Query: 330 NTKVDIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKI 509
++ V A RI+W+DLEMTGL++ D I+E+A ++TD QLN+V+ +VI+ E +
Sbjct: 3 SSAVQKADRIIWIDLEMTGLNVMQDKILEVASIITDDQLNIVSDEFQMVIHQSEDVFETM 62
Query: 510 I 512
I
Sbjct: 63 I 63
>UniRef50_UPI0000DB7BA5 Cluster: PREDICTED: similar to Probable
oligoribonuclease; n=1; Apis mellifera|Rep: PREDICTED:
similar to Probable oligoribonuclease - Apis mellifera
Length = 212
Score = 56.4 bits (130), Expect = 5e-07
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = +3
Query: 330 NTKVDIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKI 509
+T V IVW+D+EM+GLDI I+EIAC++TD L V+ +IVI+ + LN +
Sbjct: 22 STNVQKNDYIVWLDMEMSGLDINTSQILEIACVITDKNLKTVSKDLNIVIHQSDEILNNM 81
Score = 36.3 bits (80), Expect = 0.60
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNHV 625
N+WC H +TGL S ++ +AE+I+LK++ +V
Sbjct: 82 NDWCLATHQKTGLIHESRLSKITIQDAEQILLKYLKTYV 120
>UniRef50_Q22ZB0 Cluster: Exonuclease family protein; n=1;
Tetrahymena thermophila SB210|Rep: Exonuclease family
protein - Tetrahymena thermophila SB210
Length = 190
Score = 56.0 bits (129), Expect = 7e-07
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +3
Query: 318 MTKKNTKVDIAQRIVWMDLEMTGLD-IENDHIMEIACLVTDAQLNVVATGPDIVINLPEV 494
M + K+ + ++W D EMTGL+ + ND I+EIA L+TD +L V GP+++I P+
Sbjct: 1 MDSQEQKIKLKDPLLWCDCEMTGLNFLNNDQIIEIATLLTDGELTQVIKGPELIIQAPKE 60
Query: 495 TLNKI 509
L +
Sbjct: 61 LLESM 65
Score = 32.7 bits (71), Expect = 7.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNH 622
+ WC H +GL + LKS+ +L AE ++KF+ ++
Sbjct: 66 DEWCTNTHKGSGLYDKVLKSEVTLQMAEEQVIKFLKDN 103
>UniRef50_Q5KPH7 Cluster: Oligoribonuclease, putative; n=2;
Filobasidiella neoformans|Rep: Oligoribonuclease,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 184
Score = 55.6 bits (128), Expect = 9e-07
Identities = 26/63 (41%), Positives = 37/63 (58%)
Frame = +3
Query: 357 IVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVRSNTA 536
+VW+D EMTGLD ND I+EIA ++TD +LN V G +I P+ L+ + R
Sbjct: 13 LVWVDCEMTGLDFLNDRIIEIAVIITDGRLNPVDGGISYIIKTPKEVLDNMGDWCREQHG 72
Query: 537 RQG 545
+ G
Sbjct: 73 KSG 75
Score = 35.1 bits (77), Expect = 1.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 512 NWCKVQHGETGLTEACLKSDTSLAEAERIILKFV 613
+WC+ QHG++GL +ACL S S +L ++
Sbjct: 65 DWCREQHGKSGLIQACLDSPYSYDTVVEKVLDYI 98
>UniRef50_Q62M61 Cluster: Oligoribonuclease; n=90; Bacteria|Rep:
Oligoribonuclease - Burkholderia mallei (Pseudomonas
mallei)
Length = 201
Score = 55.6 bits (128), Expect = 9e-07
Identities = 25/63 (39%), Positives = 41/63 (65%)
Frame = +3
Query: 357 IVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVRSNTA 536
+VW+D+EMTGLD + D I+EIA +VT++ L++ GP + I+ + TL K+ ++
Sbjct: 20 LVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHG 79
Query: 537 RQG 545
R G
Sbjct: 80 RSG 82
>UniRef50_Q6BKE6 Cluster: Similar to CA4537|CaYNT2 Candida albicans
CaYNT2 suppressor of rna12/yme2; n=3;
Saccharomycetales|Rep: Similar to CA4537|CaYNT2 Candida
albicans CaYNT2 suppressor of rna12/yme2 - Debaryomyces
hansenii (Yeast) (Torulaspora hansenii)
Length = 278
Score = 52.8 bits (121), Expect = 6e-06
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +3
Query: 330 NTKVDIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVV 455
N+K I + +VW+D EMTGL++ DHI+EI C++TD L ++
Sbjct: 64 NSKKPIWKPLVWIDCEMTGLNVFQDHIIEICCIITDGNLEII 105
Score = 33.1 bits (72), Expect = 5.6
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKS-DTSLAEAERIILKFVSNHV 625
N WC QHG++GLT L++ L++ E +L+++ +V
Sbjct: 125 NEWCVNQHGKSGLTAKILENPQCELSKIEDELLEYIKQYV 164
>UniRef50_Q8G3N5 Cluster: Oligoribonuclease; n=4;
Bifidobacterium|Rep: Oligoribonuclease - Bifidobacterium
longum
Length = 216
Score = 51.6 bits (118), Expect = 1e-05
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +3
Query: 354 RIVWMDLEMTGLDI-ENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVRSN 530
R++W+D EMTGLDI D ++E++ + TD LNV+ G D VI E +N + VR
Sbjct: 16 RLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEKAVNHMNDFVRQM 75
Query: 531 TARQG 545
R G
Sbjct: 76 HTRSG 80
>UniRef50_A2XRP8 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 214
Score = 50.0 bits (114), Expect = 5e-05
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +3
Query: 342 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTD 437
D + +VW+DLEMTGLDI D I+EIAC++TD
Sbjct: 66 DYDKPLVWIDLEMTGLDITKDRILEIACIITD 97
>UniRef50_A5E684 Cluster: Oligoribonuclease, mitochondrial; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep:
Oligoribonuclease, mitochondrial - Lodderomyces
elongisporus (Yeast) (Saccharomyces elongisporus)
Length = 269
Score = 50.0 bits (114), Expect = 5e-05
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +3
Query: 357 IVWMDLEMTGLDI-ENDHIMEIACLVTDAQLNVVATGP--DIVINLPEVTLNKI 509
+VW+D EMTGLD+ D I+EI C+VTD L V+ G + I P+ TL+K+
Sbjct: 77 LVWVDCEMTGLDVLGEDRIIEICCIVTDENLEVLGNGDYYESTIYYPQETLDKM 130
>UniRef50_Q056X5 Cluster: Oligoribonuclease; n=1; Buchnera
aphidicola str. Cc (Cinara cedri)|Rep: Oligoribonuclease
- Buchnera aphidicola subsp. Cinara cedri
Length = 181
Score = 49.2 bits (112), Expect = 8e-05
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +3
Query: 351 QRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKI 509
+ ++W+DLE TGL+ + I+EI+ ++TD LN++ GP+I+I + L KI
Sbjct: 6 ENLIWVDLETTGLNPKIHKIIEISTIITDKNLNILEIGPNIIIFQKKEFLRKI 58
>UniRef50_Q8B5Y0 Cluster: Putative oligoribonuclease; n=1;
Diachasmimorpha longicaudata entomopoxvirus|Rep:
Putative oligoribonuclease - Diachasmimorpha
longicaudata entomopoxvirus
Length = 206
Score = 48.4 bits (110), Expect = 1e-04
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +3
Query: 345 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVA 458
+A I W+DLEMTGLD E D+I+EI C +T+ L + +
Sbjct: 27 MANNIAWLDLEMTGLDPETDNILEIGCFITNDALEITS 64
Score = 35.5 bits (78), Expect = 1.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 500 KQNNNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNH 622
K + WCK H + GL + S TSL AE+ +++F H
Sbjct: 79 KSMDKWCKKTHTKNGLITEVMNSKTSLEVAEKKLIQFFKAH 119
>UniRef50_A5KRR8 Cluster: Oligoribonuclease; n=1; candidate division
TM7 genomosp. GTL1|Rep: Oligoribonuclease - candidate
division TM7 genomosp. GTL1
Length = 184
Score = 48.4 bits (110), Expect = 1e-04
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +3
Query: 354 RIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVRSNT 533
+++W+DLEMTGLD + D ++E+A + TD +A +V P+V L+ + VRS
Sbjct: 12 KLLWLDLEMTGLDPQRDRVLEVAAIATDWNFEEMAVIESVVHQSPKV-LDLMDDWVRSQH 70
Query: 534 ARQG 545
A G
Sbjct: 71 ASSG 74
Score = 37.1 bits (82), Expect = 0.34
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSN 619
++W + QH +GLTE SD S +AE I+L+F+ +
Sbjct: 63 DDWVRSQHASSGLTERVRASDVSETDAEDILLQFIDS 99
>UniRef50_O94626 Cluster: Probable oligoribonuclease; n=5;
Ascomycota|Rep: Probable oligoribonuclease -
Schizosaccharomyces pombe (Fission yeast)
Length = 180
Score = 48.4 bits (110), Expect = 1e-04
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +3
Query: 342 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKI 509
++ Q +VW+D EMTGL++ +ME+A ++TD L V D VI L E L+++
Sbjct: 3 NLKQPLVWIDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEKFDAVIKLDEKQLSEM 58
Score = 42.3 bits (95), Expect = 0.009
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNHV 625
N+WC QHG++GLTE C +S+ ++ + E +L ++ ++
Sbjct: 59 NDWCIEQHGKSGLTERCRQSNLTVKDVENQLLAYIKKYI 97
>UniRef50_Q2HAN9 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 228
Score = 47.6 bits (108), Expect = 2e-04
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +3
Query: 357 IVWMDLEMTGLDIENDHIMEIACLVTDAQLNVV 455
+VW+D EMTGLD E D I+EI C++TD QL ++
Sbjct: 19 LVWIDCEMTGLDPETDAIIEIYCIITDGQLKLL 51
>UniRef50_P54964 Cluster: Oligoribonuclease, mitochondrial
precursor; n=4; Saccharomycetaceae|Rep:
Oligoribonuclease, mitochondrial precursor -
Saccharomyces cerevisiae (Baker's yeast)
Length = 269
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +3
Query: 336 KVDIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQL 446
K + + +VW+D EMTGLD ND I+EI C++TD L
Sbjct: 48 KTKLFKPLVWIDCEMTGLDHVNDRIIEICCIITDGHL 84
Score = 38.3 bits (85), Expect = 0.15
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNHV 625
N WC HG +GLT L S+ +LA+ E +L+++ ++
Sbjct: 113 NEWCIEHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYI 151
>UniRef50_A7BDJ9 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 198
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +3
Query: 378 MTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVRSNTARQG 545
MTGLD++ D ++E+A +VTD L +V G D++I P L+ + VR+ G
Sbjct: 1 MTGLDVQRDALIEVAVVVTDGDLTIVDPGMDVLITPPAEALDNMNDFVRNMHTSSG 56
>UniRef50_A0E2M4 Cluster: Chromosome undetermined scaffold_75, whole
genome shotgun sequence; n=3; Eukaryota|Rep: Chromosome
undetermined scaffold_75, whole genome shotgun sequence
- Paramecium tetraurelia
Length = 176
Score = 45.2 bits (102), Expect = 0.001
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = +3
Query: 372 LEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVIN 482
+EMTGL++ D I+EIAC++TD +L + GP +VI+
Sbjct: 1 MEMTGLNVFQDQILEIACVLTDFKLETIIKGPHLVIH 37
Score = 32.7 bits (71), Expect = 7.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNH 622
+ WC H +GL E LKS ++ +AE IL F++ +
Sbjct: 47 DQWCTKTHKASGLYEESLKSTLNVQQAEEQILNFLNQN 84
>UniRef50_A4QVJ0 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 223
Score = 45.2 bits (102), Expect = 0.001
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = +3
Query: 357 IVWMDLEMTGLDIENDHIMEIACLVTDAQLNV 452
+VW+D EMTGL+ +++ I+EI CLVTD LN+
Sbjct: 8 LVWIDCEMTGLNPDSEEIIEIFCLVTDGDLNL 39
Score = 35.1 bits (77), Expect = 1.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNHV 625
+ WC QHG +GLT + S T+ EA +L ++ HV
Sbjct: 60 DEWCTKQHGGSGLTARVVGSTTTPEEAADGLLAYIKKHV 98
>UniRef50_Q6MNB4 Cluster: Oligoribonuclease; n=1; Bdellovibrio
bacteriovorus|Rep: Oligoribonuclease - Bdellovibrio
bacteriovorus
Length = 175
Score = 44.4 bits (100), Expect = 0.002
Identities = 19/52 (36%), Positives = 34/52 (65%)
Frame = +3
Query: 354 RIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKI 509
++ W+D+EMTGLD+E + I+E+A +VTD + T + V+ P+ L+ +
Sbjct: 3 KLFWIDMEMTGLDVEKEVIIEVAAIVTDLNFKELETF-ETVVKQPQKYLDSM 53
>UniRef50_A6DMP4 Cluster: Oligoribonuclease; n=1; Lentisphaera
araneosa HTCC2155|Rep: Oligoribonuclease - Lentisphaera
araneosa HTCC2155
Length = 182
Score = 44.4 bits (100), Expect = 0.002
Identities = 16/34 (47%), Positives = 28/34 (82%)
Frame = +3
Query: 354 RIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVV 455
++ W+D+EMTGLD + + I+EIA L+TD +L+++
Sbjct: 3 KLFWIDMEMTGLDPDENRILEIAILITDHKLDII 36
>UniRef50_Q83GA7 Cluster: Oligoribonuclease; n=5;
Actinomycetales|Rep: Oligoribonuclease - Tropheryma
whipplei (strain Twist) (Whipple's bacillus)
Length = 184
Score = 44.4 bits (100), Expect = 0.002
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +3
Query: 357 IVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVIN 482
+VW+D EMTGL+ E D ++E+A +VTD L + G ++V++
Sbjct: 10 LVWVDCEMTGLNPERDELLEVAVVVTDKDLLPLDEGVNVVVS 51
>UniRef50_Q097T4 Cluster: Oligoribonuclease; n=2;
Cystobacterineae|Rep: Oligoribonuclease - Stigmatella
aurantiaca DW4/3-1
Length = 186
Score = 40.3 bits (90), Expect = 0.037
Identities = 26/62 (41%), Positives = 33/62 (53%)
Frame = +3
Query: 360 VWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVRSNTAR 539
VW+DLEMTGLD E I+EI ++T L V + VI PE L ++ VR R
Sbjct: 9 VWLDLEMTGLDPETCAIIEIGVIITGPDL-VPLAEIERVIWQPEEALARMEPVVREMHTR 67
Query: 540 QG 545
G
Sbjct: 68 NG 69
>UniRef50_Q8QNE0 Cluster: EsV-1-139; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-139 - Ectocarpus siliculosus virus 1
Length = 274
Score = 37.9 bits (84), Expect = 0.20
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 363 WMDLEMTGLDIENDHIMEIACLVTDAQLNVV 455
W+D+E TGLD + + I+EI +VTD LN +
Sbjct: 45 WIDMETTGLDTDTNLILEIVMVVTDRDLNEI 75
>UniRef50_Q6XM84 Cluster: FirrV-1-A3; n=1; Feldmannia irregularis
virus a|Rep: FirrV-1-A3 - Feldmannia irregularis virus a
Length = 238
Score = 35.9 bits (79), Expect = 0.79
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 363 WMDLEMTGLDIENDHIMEIACLVTDAQLNV 452
W+D+E + LD ++E+A +VTD LNV
Sbjct: 14 WIDMETSSLDFSQSEVLEVALVVTDHHLNV 43
>UniRef50_A6Q2C7 Cluster: DNA polymerase III, epsilon subunit; n=2;
Epsilonproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Nitratiruptor sp. (strain SB155-2)
Length = 197
Score = 35.1 bits (77), Expect = 1.4
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 357 IVWMDLEMTGLDIENDHIMEIACL 428
IV++D E TGLD +ND I+ IACL
Sbjct: 24 IVFIDCETTGLDPKNDEILSIACL 47
>UniRef50_A2BVT4 Cluster: Possible DNA polymerase III, epsilon
subunit; n=6; Prochlorococcus marinus|Rep: Possible DNA
polymerase III, epsilon subunit - Prochlorococcus
marinus (strain MIT 9515)
Length = 270
Score = 34.7 bits (76), Expect = 1.8
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 288 TRNLSMSPKIMTKKNTKVDIAQRIVWMDLEMTGLDIENDHIMEIACLV 431
T N S+S + +N K++ +I+ +D E TGLD D I+EI C++
Sbjct: 29 TLNQSISNSKVRTQNKKIE---KILILDTETTGLDENKDEIIEIGCIL 73
>UniRef50_A0BKH9 Cluster: Chromosome undetermined scaffold_112,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_112,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 174
Score = 34.3 bits (75), Expect = 2.4
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 399 NDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVRSNTARQG*QRLALNQT 572
ND + + AC++TD +L + GP IVI+ + L+ + + G + +LN T
Sbjct: 10 NDRVEQCACILTDYKLKTIIKGPHIVIHADKQVLDGMDEWCTTTHKASGLYQESLNST 67
>UniRef50_Q8WW27 Cluster: Putative C->U-editing enzyme APOBEC-4;
n=11; Amniota|Rep: Putative C->U-editing enzyme APOBEC-4
- Homo sapiens (Human)
Length = 367
Score = 34.3 bits (75), Expect = 2.4
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = -3
Query: 190 SLHKKNEINSCTTLHYIHTISEIYLHQYYLY*SNYNHDQVY*IALYINNT 41
SL +K +SCT +YIH S ++ YL + YN+D + I LY NN+
Sbjct: 77 SLVQKGHASSCTG-NYIHPESMLFEMNGYLDSAIYNNDSIRHIILYSNNS 125
>UniRef50_Q6FBS1 Cluster: Putative uncharacterized protein; n=2;
Acinetobacter|Rep: Putative uncharacterized protein -
Acinetobacter sp. (strain ADP1)
Length = 75
Score = 33.5 bits (73), Expect = 4.2
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 390 DIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKIITGVRSNTARQG*QRLALNQ 569
+I N+H +IAC+ D T +V L + T II G++ +G R LN+
Sbjct: 12 EINNEHKNQIACVENDCSCK---TNEQLVSALAKATDEDIIKGIKKVLVSRGYSRKELNE 68
Query: 570 THH 578
+H
Sbjct: 69 INH 71
>UniRef50_A6DIP6 Cluster: Exonuclease; n=1; Lentisphaera araneosa
HTCC2155|Rep: Exonuclease - Lentisphaera araneosa
HTCC2155
Length = 261
Score = 33.5 bits (73), Expect = 4.2
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 336 KVDIAQRIVWMDLEMTGLDIENDHIMEIACL 428
K+++ + IV+ DLE TGL+ D I+EI C+
Sbjct: 2 KLNLQRPIVFFDLETTGLNPTEDRIIEICCI 32
>UniRef50_A5KMD9 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus torques ATCC 27756|Rep: Putative
uncharacterized protein - Ruminococcus torques ATCC
27756
Length = 279
Score = 33.1 bits (72), Expect = 5.6
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 282 FLTRNLSMSPKIMTKKNTKVDIAQRIVWMDLEMTGLDIENDHIMEIACL-VTDAQLN 449
FL +L + T+K + + + + DLE TGLD N+ I+EI L V D +++
Sbjct: 14 FLYNDLYLKLLTYTRKGVRTIMLKSYIAFDLETTGLDPMNNEIIEIGALKVRDGKVS 70
>UniRef50_Q2AKQ0 Cluster: Exonuclease; n=1; Bacillus
weihenstephanensis KBAB4|Rep: Exonuclease - Bacillus
weihenstephanensis KBAB4
Length = 271
Score = 32.7 bits (71), Expect = 7.4
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 369 DLEMTGLDIENDHIMEIACLVTDAQ 443
DLE TGLD +N+ ++EIA + TD +
Sbjct: 18 DLETTGLDYKNEQVVEIAAIRTDLE 42
>UniRef50_Q66283 Cluster: ORF 1; n=2; Cassava vein mosaic virus|Rep:
ORF 1 - Cassava vein mosaic virus
Length = 1372
Score = 32.3 bits (70), Expect = 9.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 250 HVVCNCFNVK*TLHVERNCMSLHKKNEINSCTTLHYIHTISE 125
H C C+N H+ NC KK IN+ L + +T E
Sbjct: 736 HKACKCYNCGEEGHISPNCKKPKKKTRINNLEALEFKNTEME 777
>UniRef50_Q4IVU2 Cluster: DNA polymerase III, epsilon subunit; n=13;
Pseudomonadaceae|Rep: DNA polymerase III, epsilon
subunit - Azotobacter vinelandii AvOP
Length = 240
Score = 32.3 bits (70), Expect = 9.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 348 AQRIVWMDLEMTGLDIENDHIMEIACLVTD 437
AQR V +DLE TGL++E D ++ I ++ +
Sbjct: 41 AQRFVVLDLETTGLNVERDVVLSIGAVLIE 70
>UniRef50_Q193G0 Cluster: DnaQ family exonuclease/DinG family
helicase, putative; n=2; Desulfitobacterium
hafniense|Rep: DnaQ family exonuclease/DinG family
helicase, putative - Desulfitobacterium hafniense
(strain DCB-2)
Length = 929
Score = 32.3 bits (70), Expect = 9.8
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 345 IAQRIVWMDLEMTGLDIENDHIMEIACL 428
I +IV +D+E TG DI ND I+E A L
Sbjct: 2 IKGKIVVIDIETTGFDIYNDEIIEFAAL 29
>UniRef50_A1TZ29 Cluster: DNA polymerase III, epsilon subunit; n=2;
Marinobacter|Rep: DNA polymerase III, epsilon subunit -
Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 /
VT8)(Marinobacter hydrocarbonoclasticus (strain DSM
11845))
Length = 235
Score = 32.3 bits (70), Expect = 9.8
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +3
Query: 354 RIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNK--IITGVRS 527
R++ +DLE TGL+ D ++ I + + + + D+++ PE+ + + +I G+
Sbjct: 40 RLIVLDLETTGLNASKDEVIAIGAVAIEGGVIHLNDQFDLILRRPELDIRETVLIHGIGP 99
Query: 528 NTARQG 545
QG
Sbjct: 100 EALTQG 105
>UniRef50_A5APD5 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 662
Score = 32.3 bits (70), Expect = 9.8
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 384 GLDIENDHIMEIACLVTDAQL 446
GL++E D I+EIAC++TD L
Sbjct: 31 GLNVEVDRILEIACIITDGNL 51
>UniRef50_Q0CUJ2 Cluster: Putative uncharacterized protein; n=2;
Trichocomaceae|Rep: Putative uncharacterized protein -
Aspergillus terreus (strain NIH 2624)
Length = 1453
Score = 32.3 bits (70), Expect = 9.8
Identities = 12/49 (24%), Positives = 31/49 (63%)
Frame = +3
Query: 276 ITFLTRNLSMSPKIMTKKNTKVDIAQRIVWMDLEMTGLDIENDHIMEIA 422
+T L+ +++S + + K + AQR++W+D+ + +++++ I E+A
Sbjct: 1362 LTSLSPIVTLSVGVAVTSSLKTNAAQRLMWLDVVLQTINLQDKDIREVA 1410
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,405,040
Number of Sequences: 1657284
Number of extensions: 10693235
Number of successful extensions: 25452
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 24391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25440
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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