Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20015
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26970.1 68415.m03235 exonuclease family protein contains exo...    62   4e-10
At1g31920.1 68414.m03922 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At2g26970.1 68415.m03235 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 222

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 26/56 (46%), Positives = 39/56 (69%)
 Frame = +3

Query: 342 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKI 509
           D  Q +VW+DLEMTGL++E D I+EIAC++T+  L     GPD+V+   +  L+K+
Sbjct: 41  DYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKM 96



 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +2

Query: 509 NNWCKVQHGETGLTEACLKSDTSLAEAERIILKFVSNHV 625
           ++WC+  HG +GLT+  L S  +  EAE+ +++FV  HV
Sbjct: 97  DDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHV 135


>At1g31920.1 68414.m03922 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 606

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 547 QPCLAVLDLTPVIILFKVTSGRFITISGPVATTFSCASVTRHAISIMWSFSMS 389
           Q CL +L     I  FK    RFI +S   +++FS +SV        W  SM+
Sbjct: 31  QECLYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMN 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,702,606
Number of Sequences: 28952
Number of extensions: 232449
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)