Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20014
(597 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17; Eukaryo... 133 3e-30
UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86; Eukaryo... 105 8e-22
UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55; Eukaryo... 97 4e-19
UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonch... 95 1e-18
UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1; Dictyost... 95 1e-18
UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6; Eukary... 90 3e-17
UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1; ... 89 6e-17
UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40; Eukar... 87 4e-16
UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lambl... 84 3e-15
UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A, S... 79 6e-14
UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillard... 78 2e-13
UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2; E... 75 1e-12
UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14; Euryar... 73 4e-12
UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, wh... 73 7e-12
UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S riboso... 70 4e-11
UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3; Archaea... 70 4e-11
UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1; Encephal... 65 1e-09
UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2; Methano... 62 7e-09
UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4; Euryarc... 60 4e-08
UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S riboso... 58 2e-07
UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2; Thermoprotei... 57 3e-07
UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5; Thermop... 56 6e-07
UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2; Tr... 54 3e-06
UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8; Thermop... 54 3e-06
UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella... 52 1e-05
UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3; Thermop... 52 1e-05
UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4; Methano... 51 2e-05
UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5; Halobac... 50 3e-05
UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1; Cenarch... 50 4e-05
UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1; Thermop... 49 7e-05
UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus N... 49 1e-04
UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S riboso... 48 2e-04
UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2; environ... 48 2e-04
UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1; Nanoarc... 48 2e-04
UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellula... 46 5e-04
UniRef50_Q6E6D2 Cluster: Large subunit ribosomal protein L9e; n=... 42 0.015
UniRef50_Q3ZZN4 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 38 0.14
UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132, w... 37 0.31
UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular... 37 0.31
UniRef50_Q7UN05 Cluster: 50S ribosomal protein L6; n=3; Planctom... 36 0.55
UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6; Proteoba... 36 0.55
UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3; Thermoto... 36 0.96
UniRef50_Q11HR7 Cluster: 50S ribosomal protein L6; n=73; Proteob... 35 1.7
UniRef50_Q83ER1 Cluster: 50S ribosomal protein L6; n=108; Proteo... 35 1.7
UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16; Firmicu... 34 2.2
UniRef50_Q5AEN3 Cluster: Putative uncharacterized protein; n=1; ... 34 2.9
UniRef50_Q847P4 Cluster: 50S ribosomal protein L6; n=1; Aster ye... 33 3.9
UniRef50_Q95S25 Cluster: GM14169p; n=3; Sophophora|Rep: GM14169p... 33 3.9
UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40; Bacteri... 33 3.9
UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34; Bacteri... 33 3.9
UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7; Bacteria... 33 5.1
UniRef50_UPI0000F2B3FB Cluster: PREDICTED: hypothetical protein;... 33 6.7
UniRef50_Q10YL0 Cluster: ATPase associated with various cellular... 33 6.7
UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1; Streptoc... 33 6.7
UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6; Bacteria... 33 6.7
UniRef50_A0UVM0 Cluster: Signal peptidase I precursor; n=2; Clos... 32 8.9
UniRef50_Q5FM76 Cluster: 50S ribosomal protein L6; n=10; Firmicu... 32 8.9
>UniRef50_P50882 Cluster: 60S ribosomal protein L9; n=17;
Eukaryota|Rep: 60S ribosomal protein L9 - Drosophila
melanogaster (Fruit fly)
Length = 190
Score = 133 bits (322), Expect = 3e-30
Identities = 85/189 (44%), Positives = 110/189 (58%), Gaps = 4/189 (2%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 207
M+ I +NQ VKIP + VK+R+VT+ G RG LKR+FKHLA+D+ M + R LKVEKWFG
Sbjct: 1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFG 60
Query: 208 SKKELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPL---TVSPLRVIQLLRYV-TSW 375
+KKELAAVRTVCSH+E +K + P+ T VI++ ++ +
Sbjct: 61 TKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKY 120
Query: 376 VRNTSEG*RWHLV*LSLTLQNKRMN*SLGNSFERCL*LWCSHPATTTVKNKDIRKFLDGL 555
+R +V + T Q + GN E +TTVKNKDIRKFLDGL
Sbjct: 121 IRRVEMAPGVTVV--NSTAQKDELIVE-GNDIESVSGSAALIQQSTTVKNKDIRKFLDGL 177
Query: 556 YVSEKTTVV 582
YVSEKTTVV
Sbjct: 178 YVSEKTTVV 186
Score = 128 bits (310), Expect = 7e-29
Identities = 59/68 (86%), Positives = 64/68 (94%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
NMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKYIRRV+MAPGVTVVNS
Sbjct: 77 NMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNST 136
Query: 435 KQKDELII 458
QKDELI+
Sbjct: 137 AQKDELIV 144
>UniRef50_P32969 Cluster: 60S ribosomal protein L9; n=86;
Eukaryota|Rep: 60S ribosomal protein L9 - Homo sapiens
(Human)
Length = 192
Score = 105 bits (252), Expect = 8e-22
Identities = 49/69 (71%), Positives = 56/69 (81%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 431
+NMIKGVT GF+YKMR+VYAHFPIN V E S++EIRNFLGEKYIRRV+M PGV S
Sbjct: 78 QNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVS 137
Query: 432 PKQKDELII 458
QKDELI+
Sbjct: 138 QAQKDELIL 146
Score = 89.8 bits (213), Expect = 4e-17
Identities = 39/82 (47%), Positives = 61/82 (74%), Gaps = 2/82 (2%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV--NPRLLKVEKW 201
MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++ + L+V+KW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 202 FGSKKELAAVRTVCSHVET*LK 267
+G++KELA VRT+CSHV+ +K
Sbjct: 61 WGNRKELATVRTICSHVQNMIK 82
Score = 46.8 bits (106), Expect = 4e-04
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +1
Query: 511 TTVKNKDIRKFLDGLYVSEKTTV 579
TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 165 TTVKNKDIRKFLDGIYVSEKGTV 187
>UniRef50_P49210 Cluster: 60S ribosomal protein L9; n=55;
Eukaryota|Rep: 60S ribosomal protein L9 - Oryza sativa
subsp. japonica (Rice)
Length = 190
Score = 96.7 bits (230), Expect = 4e-19
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 431
+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK +R+V M GVT++ S
Sbjct: 77 QNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRS 136
Query: 432 PKQKDELII 458
K KDEL++
Sbjct: 137 EKVKDELVL 145
Score = 87.4 bits (207), Expect = 2e-16
Identities = 38/77 (49%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 204
MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++ R L+V+ WF
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60
Query: 205 GSKKELAAVRTVCSHVE 255
G+++ +AA+RT SHV+
Sbjct: 61 GTRRTMAAIRTAISHVQ 77
Score = 42.3 bits (95), Expect = 0.008
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1
Query: 517 VKNKDIRKFLDGLYVSEKTTVVLD 588
VKNKDIRKFLDG+YVS+K T+ D
Sbjct: 166 VKNKDIRKFLDGIYVSDKGTITED 189
>UniRef50_O02376 Cluster: 60S ribosomal protein L9; n=1; Haemonchus
contortus|Rep: 60S ribosomal protein L9 - Haemonchus
contortus (Barber pole worm)
Length = 141
Score = 95.1 bits (226), Expect = 1e-18
Identities = 41/80 (51%), Positives = 58/80 (72%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 207
MK + +N V PDG+T VK+R+V V GPRG LKR+F+HL +++ V L+V KWFG
Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEMERVGKNQLRVRKWFG 60
Query: 208 SKKELAAVRTVCSHVET*LK 267
+KE+AA+RTVCSH++ +K
Sbjct: 61 VRKEIAAIRTVCSHIQNMIK 80
Score = 78.6 bits (185), Expect = 1e-13
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 404
+NMIKGVTKGF+YKMR+VYAHFPIN +G +EIRNFLGEK +R V +
Sbjct: 76 QNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVRPVPL 126
>UniRef50_Q54XI5 Cluster: 60S ribosomal protein L9; n=1;
Dictyostelium discoideum AX4|Rep: 60S ribosomal protein
L9 - Dictyostelium discoideum AX4
Length = 206
Score = 94.7 bits (225), Expect = 1e-18
Identities = 38/68 (55%), Positives = 52/68 (76%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
NMI GVTKG++YKMR VYAHFPIN T+G ++EIRNF GEK +RR+++ G+T +
Sbjct: 95 NMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNE 154
Query: 435 KQKDELII 458
K KDE+++
Sbjct: 155 KAKDEIVL 162
Score = 81.8 bits (193), Expect = 1e-14
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 6/175 (3%)
Frame = +1
Query: 73 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 252
+TV VK R V V GPRG L ++F H +VDI +V + L V+ WFG++K++A ++T+ S +
Sbjct: 34 VTVDVKGRSVKVTGPRGTLSKSFDHASVDINLVGKKELTVDLWFGNRKQIACIKTITSII 93
Query: 253 ET*LKE*LKASNTRCVLCMLTSPLTVSPL---RVIQLLRYVTSWVRNTSEG*RWHLV*LS 423
E + K + P+ V+ RV+++ + + R L+
Sbjct: 94 ENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVR-----RIELLDGI 148
Query: 424 LTLQNKRMN*SL---GNSFERCL*LWCSHPATTTVKNKDIRKFLDGLYVSEKTTV 579
+N++ + GNS E + + +K KD+RKFLDG+YVSE+ +
Sbjct: 149 TCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNVL 203
>UniRef50_Q10232 Cluster: 60S ribosomal protein L9-A; n=6;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Schizosaccharomyces pombe (Fission yeast)
Length = 190
Score = 90.2 bits (214), Expect = 3e-17
Identities = 42/68 (61%), Positives = 51/68 (75%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S
Sbjct: 77 NMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISS 136
Query: 435 KQKDELII 458
KDE+I+
Sbjct: 137 AVKDEIIL 144
Score = 77.8 bits (183), Expect = 2e-13
Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 3/186 (1%)
Frame = +1
Query: 31 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 210
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61
Query: 211 KKELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTVSPLR---VIQLLRYVTSWVR 381
+K A +R+V S + + + + L P+ ++ V+++ ++ +
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 382 NTSEG*RWHLV*LSLTLQNKRMN*SLGNSFERCL*LWCSHPATTTVKNKDIRKFLDGLYV 561
+ V +S ++++ + GNS E + V+NKDIRKFLDG+YV
Sbjct: 122 RVIKCLPGVTVSISSAVKDEII--LEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYV 179
Query: 562 SEKTTV 579
SE+ +
Sbjct: 180 SERGNI 185
>UniRef50_Q4P4X4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 252
Score = 89.4 bits (212), Expect = 6e-17
Identities = 40/68 (58%), Positives = 48/68 (70%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
NMIKGVT GFQYKMRAVYAHFPIN + EIRNFLGEK +R + M GVT+
Sbjct: 139 NMIKGVTVGFQYKMRAVYAHFPINIIIAGDKKSAEIRNFLGEKRVRNIAMLEGVTIQEDK 198
Query: 435 KQKDELII 458
QKD++++
Sbjct: 199 AQKDQVLV 206
Score = 39.1 bits (87), Expect = 0.078
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +1
Query: 511 TTVKNKDIRKFLDGLYVSEKTTVV 582
T V+NKDIRKFLDG+Y + K TVV
Sbjct: 225 TLVRNKDIRKFLDGIYCTGKDTVV 248
Score = 33.9 bits (74), Expect = 2.9
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRN 138
M QI + +P ++V V SR+ TVKGPRG L ++
Sbjct: 1 MLQIFKELDLAVPADVSVSVSSRVFTVKGPRGSLTKS 37
>UniRef50_P05738 Cluster: 60S ribosomal protein L9-A; n=40;
Eukaryota|Rep: 60S ribosomal protein L9-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 191
Score = 86.6 bits (205), Expect = 4e-16
Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 207
MK I Q++++P+G+TV +KSR+V V GPRG L +N KH+ V VN +L+KV G
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG 60
Query: 208 SKKELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTVSPL-----RVIQLLRYV-T 369
+K +AA+RTV S V+ + K + P+ V+ + + I++ ++
Sbjct: 61 GRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGD 120
Query: 370 SWVRNTSEG*RWHLV*LSLTLQNKRMN*SLGNSFERCL*LWCSHPATTTVKNKDIRKFLD 549
+RN V + + K GNS E V+NKDIRKFLD
Sbjct: 121 KKIRNVPVR---DGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLD 177
Query: 550 GLYVSEKTTVVLD 588
G+YVS K + D
Sbjct: 178 GIYVSHKGFITED 190
Score = 83.0 bits (196), Expect = 5e-15
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPI--NCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVN 428
NMI GVTKG++YKMR VYAHFPI N V +G IE+RNFLG+K IR V + GVT+
Sbjct: 77 NMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEF 136
Query: 429 SPKQKDELII 458
S KDE+++
Sbjct: 137 STNVKDEIVL 146
>UniRef50_Q7QU08 Cluster: GLP_108_35846_36403; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_108_35846_36403 - Giardia lamblia
ATCC 50803
Length = 185
Score = 83.8 bits (198), Expect = 3e-15
Identities = 38/69 (55%), Positives = 46/69 (66%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
NM KGVT GF+YKMR YAHFPI + N IEIRNF+ + RR++ PGVT+ S
Sbjct: 75 NMFKGVTYGFEYKMRLAYAHFPIAATVVDNNKAIEIRNFMHQIKTRRIECLPGVTIAMST 134
Query: 435 KQKDELIIR 461
KDELI+R
Sbjct: 135 NVKDELILR 143
Score = 66.9 bits (156), Expect = 3e-10
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 3/181 (1%)
Frame = +1
Query: 37 IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 216
+ ++ +K+P + + R+VTVKG +G L R+F H +DI N + V WF K
Sbjct: 3 LCSSMTIKVPTDVECTINKRVVTVKGKKGTLVRDFSHAPLDITHAND-TISVAVWFPRGK 61
Query: 217 ELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTVSPL---RVIQLLRYVTSWVRNT 387
A RT+CSH+E K + L P+ + + + I++ ++
Sbjct: 62 RNALPRTICSHIENMFKGVTYGFEYKMRLAYAHFPIAATVVDNNKAIEIRNFMHQIKTRR 121
Query: 388 SEG*RWHLV*LSLTLQNKRMN*SLGNSFERCL*LWCSHPATTTVKNKDIRKFLDGLYVSE 567
E + +S ++++ + G S E + V NKD+RKFLDG YVS
Sbjct: 122 IECLPGVTIAMSTNVKDELI--LRGISIEDVSHTAARIHESLKVPNKDLRKFLDGCYVSS 179
Query: 568 K 570
+
Sbjct: 180 R 180
>UniRef50_UPI0001554F35 Cluster: PREDICTED: similar to Chain A,
Solution Structure Of The N-Terminal Domain Of Human
Ribosomal Protein L9; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to Chain A, Solution Structure Of The
N-Terminal Domain Of Human Ribosomal Protein L9 -
Ornithorhynchus anatinus
Length = 143
Score = 79.4 bits (187), Expect = 6e-14
Identities = 37/82 (45%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLK--VEKW 201
MK I++NQ V IP + + +K R V VKGP+G L R+F H+ V++ ++ +L K V+KW
Sbjct: 1 MKTILSNQTVDIPANIGIILKGRTVIVKGPQGSLHRDFNHINVELSLLGKKLKKFHVDKW 60
Query: 202 FGSKKELAAVRTVCSHVET*LK 267
+G++KELA V T+CS V+ +K
Sbjct: 61 WGNRKELATVHTICSPVQNTIK 82
>UniRef50_Q9AW64 Cluster: 60S ribosomal protein L9; n=1; Guillardia
theta|Rep: 60S ribosomal protein L9 - Guillardia theta
(Cryptomonas phi)
Length = 188
Score = 77.8 bits (183), Expect = 2e-13
Identities = 34/68 (50%), Positives = 48/68 (70%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
NMI GV+ GF+Y ++ +YAHFPIN T+ S +EIRNFLGEK IR++ M GV + +
Sbjct: 78 NMIVGVSLGFEYILQPIYAHFPINLSITDDGSCLEIRNFLGEKRIRKIYMGQGVKIKKNE 137
Query: 435 KQKDELII 458
+KDE+ +
Sbjct: 138 AKKDEISV 145
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL-LKVEKWF 204
M I +K+KIP + + K+R ++ G G + R+F+ + IR + + + W
Sbjct: 1 MLTIKTIRKIKIPKNVKIKTKARKISATGSLGSIIRSFEKTQISIRYFEKKKEIILLLWM 60
Query: 205 GSKKELAAVRTVCSHV 252
KK+LA + T+ SH+
Sbjct: 61 AGKKQLAKLNTIASHI 76
>UniRef50_UPI00004985C5 Cluster: 60S ribosomal protein L9; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L9 - Entamoeba histolytica HM-1:IMSS
Length = 197
Score = 75.4 bits (177), Expect = 1e-12
Identities = 35/69 (50%), Positives = 46/69 (66%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 431
+NMI GVTKG+QYKMR VYAHFP+ V + I+++NFLGEK R ++M GV V
Sbjct: 86 KNMITGVTKGYQYKMRVVYAHFPVTLVIADDGKSIQVQNFLGEKRTRHIEMYDGVVV--K 143
Query: 432 PKQKDELII 458
KDE+ +
Sbjct: 144 KLGKDEICL 152
Score = 66.9 bits (156), Expect = 3e-10
Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Frame = +1
Query: 49 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI-------RMVNPR--LLKVEKW 201
+ V IP+G+ + + + + V GPRG L R F+H VDI + P+ ++ ++ W
Sbjct: 9 EHVVIPEGVNIEINRKNIKVTGPRGSLTREFQHPKVDIYASKLVVKKEGPKENVVVIDMW 68
Query: 202 FGSKKELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTV---SPLRVIQLLRYVTS 372
+G++++ A VRT+ SH++ + K + + P+T+ + IQ+ ++
Sbjct: 69 YGNRRDSAVVRTIASHIKNMITGVTKGYQYKMRVVYAHFPVTLVIADDGKSIQVQNFLGE 128
Query: 373 WVRNTSEG*RWHLV*LSLTLQNKRMN*SLGNSFERCL*LWCSHPATTTVKNKDIRKFLDG 552
+ T + V + +++ GN E+ + A V+NKDIR+FLDG
Sbjct: 129 --KRTRHIEMYDGVVVKKLGKDEIC--LEGNDVEKVSQSAANIHAANLVRNKDIRQFLDG 184
Query: 553 LYVSEKTTVVLD 588
+YVSEK + D
Sbjct: 185 VYVSEKCLIEND 196
>UniRef50_Q8U015 Cluster: 50S ribosomal protein L6P; n=14;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Pyrococcus furiosus
Length = 184
Score = 73.3 bits (172), Expect = 4e-12
Identities = 35/57 (61%), Positives = 45/57 (78%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTV 422
RNMIKGVT+GF YK++ VY+HFPI+ V +G+ +I I NFLGEK R+ K+ PGVTV
Sbjct: 76 RNMIKGVTEGFTYKLKVVYSHFPIS-VKVQGDEVI-IENFLGEKAPRKAKILPGVTV 130
Score = 45.2 bits (102), Expect = 0.001
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = +1
Query: 49 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 228
++V+IP+G+ V V+ V VKGP+G L+R F + I + ++ + K F +K++A
Sbjct: 9 EEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVV-IYKDFPRRKDVAI 67
Query: 229 VRTVCSHVET*LK 267
RT +H+ +K
Sbjct: 68 ARTFAAHIRNMIK 80
>UniRef50_A0DI71 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=6; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_51, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 196
Score = 72.5 bits (170), Expect = 7e-12
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +3
Query: 210 QKGACRREDSLFTCRNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 389
+K C+ RNMI+GVT G+++KM YAHFPI +EI+NFLGEK I
Sbjct: 71 RKQRCQVNSVASQIRNMIRGVTTGYKFKMVLAYAHFPIIINLIGNGQGVEIKNFLGEKII 130
Query: 390 RRVKMAPGVTVV-NSPKQKDELIIR 461
R +K PGVT+ N ++K+ L ++
Sbjct: 131 RTIKCLPGVTITRNEAEEKNVLTLQ 155
Score = 70.1 bits (164), Expect = 4e-11
Identities = 59/198 (29%), Positives = 101/198 (51%), Gaps = 17/198 (8%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM---VNPR------ 180
MK I+ + V IP+ + + KS++V VKGPRG L +NF+H A+DI++ VN +
Sbjct: 1 MKYILTEEHVPIPEKIEITQKSKVVKVKGPRGELTKNFRHSALDIQVQKKVNKKNNVAKS 60
Query: 181 LLKVEKWFGSKKELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTVSPL---RVIQ 351
+ V W +K+ V +V S + ++ + VL P+ ++ + + ++
Sbjct: 61 RVSVRMWQSYRKQRCQVNSVASQIRNMIRGVTTGYKFKMVLAYAHFPIIINLIGNGQGVE 120
Query: 352 LLRYVTSWVRNTSEG*RWHLV*LSLT---LQNKRMN*SLGNSFERCL*LWCS--HPATTT 516
+ ++ + T + L +++T + K + GN + L C+ H A
Sbjct: 121 IKNFLGEKIIRTIK----CLPGVTITRNEAEEKNVLTLQGNDLNN-VSLTCALIHQA-CA 174
Query: 517 VKNKDIRKFLDGLYVSEK 570
VKNKDIR+FLDG+YVSEK
Sbjct: 175 VKNKDIRQFLDGIYVSEK 192
>UniRef50_UPI0000D9FBAF Cluster: PREDICTED: similar to 60S ribosomal
protein L9, partial; n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L9, partial - Macaca
mulatta
Length = 179
Score = 70.1 bits (164), Expect = 4e-11
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Frame = +1
Query: 28 MKQIVANQKVKIP-DGLTVHV--KSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVE 195
MK I + ++IP DG TV V KSR + V G G L+R F+H+ VD+++V R + VE
Sbjct: 60 MKTIHSQIDIQIPEDGSTVKVTLKSRHIVVSGKYGKLERTFRHIPVDMKLVEDGRKITVE 119
Query: 196 KWFGSKKELAAVRTVCSHVE 255
WFG K A +RTVCSH+E
Sbjct: 120 MWFGLTKNKACIRTVCSHIE 139
Score = 56.0 bits (129), Expect = 6e-07
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFL 374
NMI GV + +QYK+R VYAHFPIN T S IEIRNFL
Sbjct: 140 NMITGVRQRYQYKLRFVYAHFPINSNITNDGSTIEIRNFL 179
>UniRef50_Q5JJG4 Cluster: 50S ribosomal protein L6P; n=3;
Archaea|Rep: 50S ribosomal protein L6P - Pyrococcus
kodakaraensis (Thermococcus kodakaraensis)
Length = 184
Score = 70.1 bits (164), Expect = 4e-11
Identities = 32/56 (57%), Positives = 44/56 (78%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTV 422
NMIKGVT+GF+Y+++ VY+HFP+ V +G+ ++ I NFLGEK RR K+ PGVTV
Sbjct: 77 NMIKGVTEGFKYRLKVVYSHFPMT-VKVQGDEVV-IENFLGEKNPRRAKILPGVTV 130
Score = 52.8 bits (121), Expect = 6e-06
Identities = 30/94 (31%), Positives = 53/94 (56%)
Frame = +1
Query: 49 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 228
++++IP+G+ V V+ V VKGP+G L+R K+ V I + +++ + K F KK++A
Sbjct: 9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIFTEDGKVV-IYKEFPRKKDVAI 67
Query: 229 VRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTV 330
VRT +H+ +K + R + P+TV
Sbjct: 68 VRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTV 101
>UniRef50_Q8SSF7 Cluster: 60S RIBOSOMAL PROTEIN L9; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L9 -
Encephalitozoon cuniculi
Length = 204
Score = 65.3 bits (152), Expect = 1e-09
Identities = 32/69 (46%), Positives = 43/69 (62%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 431
RN IK VT GF Y M+AVY HF IN E I+ ++NFLGEK ++R +M G V
Sbjct: 95 RNAIKAVTVGFAYTMKAVYNHFSINMEIKEDGKILLVKNFLGEKNVKRFRMR-GAARVRL 153
Query: 432 PKQKDELII 458
++KD ++I
Sbjct: 154 DERKDTIVI 162
Score = 35.5 bits (78), Expect = 0.96
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +1
Query: 13 KQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG-VLKRNFKH-LAVDIRMVNPRLL 186
K P M+ I+ + VK+P+ T + ++ T +GP+G +++ +H L DI N +
Sbjct: 17 KDLPLMR-ILVTRIVKVPEDCTATQEGKIFTFQGPKGSIVEDCTRHPLTFDIHEGN---I 72
Query: 187 KVEKWFGSKKELAAVRTVCSHVET*LK 267
++ W G +K +A TV S + +K
Sbjct: 73 RIRLWNGKRKAMALAITVESLLRNAIK 99
>UniRef50_A3CT13 Cluster: 50S ribosomal protein L6P; n=2;
Methanomicrobiales|Rep: 50S ribosomal protein L6P -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 174
Score = 62.5 bits (145), Expect = 7e-09
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTV 422
+NMI+GV G++Y+M+ VY+HFPI + +GN +EI NFLGEK R K+ GVTV
Sbjct: 72 KNMIRGVADGYEYRMKVVYSHFPIQ-LKQQGNR-LEITNFLGEKQPRIAKIIEGVTV 126
Score = 35.5 bits (78), Expect = 0.96
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +1
Query: 49 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAA 228
++V+IP G+ V + ++TV GP+G L R+ + +D+ MV + V K+ LA
Sbjct: 5 RQVEIPPGVDVTLDGGVLTVSGPKGTLVRDMRFPQIDL-MVEGGEVVVSTASEKKRILAM 63
Query: 229 VRTVCSHVE 255
T+ +H +
Sbjct: 64 TGTLEAHAK 72
>UniRef50_O28370 Cluster: 50S ribosomal protein L6P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L6P -
Archaeoglobus fulgidus
Length = 196
Score = 60.1 bits (139), Expect = 4e-08
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 404
N+I GV +GF+Y ++ VYAHFPI V EGN +I I NF+GEK+ RR K+
Sbjct: 95 NLITGVKEGFEYHLKVVYAHFPIK-VRVEGNEVI-IENFIGEKHPRRAKI 142
>UniRef50_UPI0000DA368E Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 92
Score = 58.0 bits (134), Expect = 2e-07
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = +3
Query: 279 GFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELI 455
GF Y+MR+VYA FP N + E S+IE + +G+KYI RV++ V S QK+EL+
Sbjct: 33 GFHYRMRSVYAGFPTNVIIQENGSVIEHWSAMGKKYIHRVQIRTSVAFYASQAQKNELM 91
>UniRef50_A1RXT3 Cluster: Ribosomal protein L6; n=2;
Thermoprotei|Rep: Ribosomal protein L6 - Thermofilum
pendens (strain Hrk 5)
Length = 191
Score = 57.2 bits (132), Expect = 3e-07
Identities = 32/68 (47%), Positives = 46/68 (67%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
NMI GVTKG++YK++ VYAHFP++ + E + II I NFLGE+ R + PG V
Sbjct: 77 NMIIGVTKGYRYKLKIVYAHFPMS-LKVEKDKII-IENFLGERGKRIAGIMPGAKV---K 131
Query: 435 KQKDELII 458
+KD++I+
Sbjct: 132 IEKDDVIV 139
Score = 48.4 bits (110), Expect = 1e-04
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHL-AVDIRMVNPRLLKVEKWF 204
M+ + + V IP+G+ VHV + V V+GP G ++++F H + IR V + VE +
Sbjct: 1 MRVLQKTESVPIPEGVKVHVNGKRVEVEGPLGKVEKDFSHARRISIR-VEGNSVVVETFH 59
Query: 205 GSKKELAAVRTVCS 246
+KK+ A V T+ S
Sbjct: 60 ATKKDYALVGTIAS 73
>UniRef50_Q8ZVA7 Cluster: 50S ribosomal protein L6P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L6P -
Pyrobaculum aerophilum
Length = 196
Score = 56.0 bits (129), Expect = 6e-07
Identities = 28/76 (36%), Positives = 48/76 (63%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 431
+NM GVT+G++YK++ +Y HFP+ V +GN ++ I NFLG K + + GV V
Sbjct: 80 KNMFLGVTRGWRYKLKVIYTHFPM-LVKVQGNQLV-IENFLGRKSKITLNIPKGVKV--E 135
Query: 432 PKQKDELIIRQLFRKM 479
K K++++I + R++
Sbjct: 136 VKGKEDIVIEGIDREL 151
Score = 32.7 bits (71), Expect = 6.7
Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSR-----LVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 192
M+ + + ++V+IP G++V ++ +V VKGP G + + FK+ V + + + +++ +
Sbjct: 1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQDGKIV-M 59
Query: 193 EKWFGSKKELAAVRT 237
E + K+E A + T
Sbjct: 60 EVFKARKREYAILGT 74
>UniRef50_A2GN76 Cluster: Ribosomal protein L6, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 197
Score = 53.6 bits (123), Expect = 3e-06
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTV-VN 428
+NMI GVT G++YKM VY+HFPI +E + F+G K + V GV + N
Sbjct: 84 KNMITGVTLGWRYKMHFVYSHFPIKHTCSEDGRTFDFNGFMGHKEHKIVTAPEGVRIWSN 143
Query: 429 SPKQKDELII 458
KDE+ I
Sbjct: 144 ESVAKDEINI 153
Score = 32.7 bits (71), Expect = 6.7
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +1
Query: 31 KQIVANQKVKIPDGLTVHVKSRLVTV--KGPR----GVLKRNFKHLAVDIRM-VNPRLLK 189
+ ++ + KIP+ + VKS +VT+ + P+ L ++ HL +D N +
Sbjct: 3 RPVLHQEHFKIPENIKCTVKSGVVTIEHQDPKDKKTSKLVKDLSHLKLDFEYDENDHQIV 62
Query: 190 VEKWFGSKKELAAVRTV 240
WFG++K LA + T+
Sbjct: 63 ARCWFGNRKLLARIGTL 79
Score = 32.7 bits (71), Expect = 6.7
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +1
Query: 511 TTVKNKDIRKFLDGLYV 561
T +K+KD+RKFLDG+YV
Sbjct: 172 TKIKDKDLRKFLDGIYV 188
>UniRef50_O05637 Cluster: 50S ribosomal protein L6P; n=8;
Thermoprotei|Rep: 50S ribosomal protein L6P - Sulfolobus
acidocaldarius
Length = 189
Score = 53.6 bits (123), Expect = 3e-06
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTV 422
+NMI G G++Y ++ + HFPI+ V G+ + ++ N +GEK IRR K+ PGV V
Sbjct: 79 KNMITGTINGYRYYLKVISTHFPIS-VKVSGDEV-QVSNLIGEKNIRRAKILPGVKV 133
Score = 39.9 bits (89), Expect = 0.044
Identities = 19/77 (24%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM-VNPRLLKVEKWF 204
+K ++++IPD + V +++ ++ VKGP+G + ++F + A IR+ +N + +E F
Sbjct: 4 LKAAYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSY-AKGIRIQLNEGKIILETTF 62
Query: 205 GSKKELAAVRTVCSHVE 255
+++ A + ++ +H++
Sbjct: 63 ADRRKKALLYSIIAHIK 79
>UniRef50_Q3LWE8 Cluster: Ribosomal protein L9; n=1; Bigelowiella
natans|Rep: Ribosomal protein L9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 190
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
NMI GV+KGF Y ++ VY+HFPI+ + + +EI N G K I + V V +
Sbjct: 79 NMIIGVSKGFTYLLKIVYSHFPISVKYIQNENTLEITNLFGLKRIDSFFIPSSVQVCTNN 138
Query: 435 KQKDELII 458
K E+I+
Sbjct: 139 LNKKEIIL 146
>UniRef50_Q6L1B1 Cluster: 50S ribosomal protein L6P; n=3;
Thermoplasmatales|Rep: 50S ribosomal protein L6P -
Picrophilus torridus
Length = 180
Score = 51.6 bits (118), Expect = 1e-05
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +3
Query: 258 MIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTV 422
+I+GVTKGF+Y M+ + HFP+ V+ G+ +I + NFLGEK R K+ G V
Sbjct: 77 LIEGVTKGFEYHMKIDFTHFPMR-VSVRGDKLI-VENFLGEKSPRSAKIVDGCKV 129
>UniRef50_Q8PV34 Cluster: 50S ribosomal protein L6P; n=4;
Methanomicrobia|Rep: 50S ribosomal protein L6P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 176
Score = 50.8 bits (116), Expect = 2e-05
Identities = 26/51 (50%), Positives = 36/51 (70%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 404
+N+I GV++GF+ KM VYAHFP+ V EG +++ I NFLGEK R K+
Sbjct: 74 KNLIIGVSEGFECKMNIVYAHFPMQ-VKVEGKTLV-IGNFLGEKKPRIAKI 122
Score = 39.5 bits (88), Expect = 0.059
Identities = 19/67 (28%), Positives = 39/67 (58%)
Frame = +1
Query: 55 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVR 234
++IP+G++V + + T KGP+G ++R F + + I + ++ V+ K++ A V
Sbjct: 9 IEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGEVV-VDAESSRKEQKAMVG 67
Query: 235 TVCSHVE 255
T SH++
Sbjct: 68 TFASHLK 74
>UniRef50_P14135 Cluster: 50S ribosomal protein L6P; n=5;
Halobacteriaceae|Rep: 50S ribosomal protein L6P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 178
Score = 50.4 bits (115), Expect = 3e-05
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 395
NM GVT+G++Y M Y+HFP+ V EG+ ++ I NFLGEK RR
Sbjct: 72 NMFHGVTEGWEYGMEVFYSHFPMQ-VNVEGDEVV-IENFLGEKAPRR 116
>UniRef50_A0RVY9 Cluster: Ribosomal protein L6P/L9E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein L6P/L9E -
Cenarchaeum symbiosum
Length = 165
Score = 50.0 bits (114), Expect = 4e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 431
RN+ +GV G+ K++ VYAHFPI + +G ++I + NF GE+ R+ K+ G VV+
Sbjct: 60 RNLCEGVGVGYTIKLKVVYAHFPIT-IKQDG-AMILVENFQGERSARKAKIVGGTKVVS- 116
Query: 432 PKQKDELIIRQLFRKMS 482
K +D ++ + +S
Sbjct: 117 -KGEDVIVTGHVLTDVS 132
Score = 33.1 bits (72), Expect = 5.1
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +1
Query: 511 TTVKNKDIRKFLDGLYVSEK 570
T VKNKD R FLDG+YV EK
Sbjct: 142 TKVKNKDHRVFLDGVYVYEK 161
>UniRef50_Q97BW0 Cluster: 50S ribosomal protein L6P; n=1;
Thermoplasma volcanium|Rep: 50S ribosomal protein L6P -
Thermoplasma volcanium
Length = 178
Score = 49.2 bits (112), Expect = 7e-05
Identities = 24/58 (41%), Positives = 40/58 (68%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVN 428
NM+KG+ +GFQY+M+ Y+HFP+ V+ +G +++ I NF GE+ R ++ G T V+
Sbjct: 76 NMVKGLKEGFQYEMKIDYSHFPMR-VSVKGKTVV-IENFFGERSPRTAEIV-GETQVS 130
>UniRef50_A7DSX9 Cluster: Ribosomal protein L6; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L6
- Candidatus Nitrosopumilus maritimus SCM1
Length = 185
Score = 48.8 bits (111), Expect = 1e-04
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 431
RN+ +G+ +G+ KM+ V+AHFPI V EG I+ I NF GE+ R + V+
Sbjct: 78 RNICEGLVEGYTIKMKVVFAHFPIT-VKVEGKKIL-IENFQGERAPRSTHIMGNTKVI-- 133
Query: 432 PKQKDELIIRQLF 470
PK +D L+ +++
Sbjct: 134 PKGEDVLLTGEVW 146
Score = 42.7 bits (96), Expect = 0.006
Identities = 38/173 (21%), Positives = 77/173 (44%)
Frame = +1
Query: 52 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 231
+V+IP+G+TV ++ +GP G +NF+++ V I + + ++ ++ K++ A +
Sbjct: 12 QVEIPEGVTVTQNKNMLLFEGPLGKTHKNFRNIPVKIEIADGKV-NLKTIGERKRDYAIL 70
Query: 232 RTVCSHVET*LKE*LKASNTRCVLCMLTSPLTVSPLRVIQLLRYVTSWVRNTSEG*RWHL 411
T S + + ++ + + P+TV ++ + + + H+
Sbjct: 71 HTARSIIRNICEGLVEGYTIKMKVVFAHFPITVK----VEGKKILIENFQGERAPRSTHI 126
Query: 412 V*LSLTLQNKRMN*SLGNSFERCL*LWCSHPATTTVKNKDIRKFLDGLYVSEK 570
+ + + G + + TT VKNKD R FLDG+YV EK
Sbjct: 127 MGNTKVIPKGEDVLLTGEVWTDITQTAANIELTTKVKNKDHRVFLDGIYVYEK 179
>UniRef50_UPI0000DA3DDB Cluster: PREDICTED: similar to 60S ribosomal
protein L9; n=3; Euarchontoglires|Rep: PREDICTED:
similar to 60S ribosomal protein L9 - Rattus norvegicus
Length = 145
Score = 48.0 bits (109), Expect = 2e-04
Identities = 19/27 (70%), Positives = 25/27 (92%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCV 332
+NMIKGV+ GF+YK+R+VYAHFP+N V
Sbjct: 43 QNMIKGVSLGFRYKVRSVYAHFPLNVV 69
Score = 41.1 bits (92), Expect = 0.019
Identities = 40/122 (32%), Positives = 54/122 (44%)
Frame = +1
Query: 214 KELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTVSPLRVIQLLRYVTSWVRNTSE 393
KELA VRT+CSHV+ +K + + S PL V+Q+ V V +
Sbjct: 30 KELATVRTICSHVQNMIKGVSLGFRYK-----VRSVYAHFPLNVVQMRTGVACSVSQAQK 84
Query: 394 G*RWHLV*LSLTLQNKRMN*SLGNSFERCL*LWCSHPATTTVKNKDIRKFLDGLYVSEKT 573
L L+ GN E T V+N+DIRKF+DG+YVSEK
Sbjct: 85 D--------ELILE--------GNDTELVSNSAALIQKATAVENQDIRKFVDGIYVSEKG 128
Query: 574 TV 579
T+
Sbjct: 129 TM 130
>UniRef50_Q673R2 Cluster: 50S ribosomal protein L6P; n=2;
environmental samples|Rep: 50S ribosomal protein L6P -
uncultured marine group II euryarchaeote DeepAnt-JyKC7
Length = 188
Score = 47.6 bits (108), Expect = 2e-04
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 410
NM +GV GF+YK++AVY+HFP+ + GN + + N GEK + RV P
Sbjct: 77 NMARGVDSGFEYKLKAVYSHFPMT-IRVNGNQ-MTVTNLFGEK-VPRVAALP 125
Score = 33.9 bits (74), Expect = 2.9
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 4/177 (2%)
Frame = +1
Query: 52 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAV 231
K+ +P+G+T V VTV L R F+H +++R + L+V KKE A
Sbjct: 10 KISLPEGVTAAVNGNDVTVAKDGNSLTREFRHPRIEVRDSSGE-LEVFVNLPRKKEKALA 68
Query: 232 RTVCSHVET*LKE*LKASNTRCVLCMLTSPLTV----SPLRVIQLLRYVTSWVRNTSEG* 399
T +H+ + + P+T+ + + V L V
Sbjct: 69 GTWAAHLTNMARGVDSGFEYKLKAVYSHFPMTIRVNGNQMTVTNLFGEKVPRVAALP--- 125
Query: 400 RWHLV*LSLTLQNKRMN*SLGNSFERCL*LWCSHPATTTVKNKDIRKFLDGLYVSEK 570
W + + +QNK G E+ + + +KN+D R F DG+Y+ K
Sbjct: 126 -WSPAEVEVKVQNKTDVTVSGADREKVGQTAANIERSCRIKNRDRRVFQDGIYIVSK 181
>UniRef50_Q74MR6 Cluster: 50S ribosomal protein L6P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L6P -
Nanoarchaeum equitans
Length = 192
Score = 47.6 bits (108), Expect = 2e-04
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +3
Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK--YIRRVKMAPGVTV- 422
+NM++GV F Y+++ Y HFP+ V EGN +I + NFLGEK I+ + V V
Sbjct: 75 KNMLEGVQNPFVYRLKVCYTHFPMR-VKLEGNKLI-VENFLGEKAPIIKELPYLDKVKVK 132
Query: 423 VNSPKQKDELII 458
+ K + E+++
Sbjct: 133 IEQNKDETEIVV 144
Score = 44.4 bits (100), Expect = 0.002
Identities = 24/101 (23%), Positives = 51/101 (50%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 207
M+ + ++ IP+ + V ++ ++ V GP+G ++R F H + + VN + +E +F
Sbjct: 1 MRIPIIKYEIPIPENVKVSYENNILKVSGPKGEVERKFYHPLIKL-SVNDNKIILETYFA 59
Query: 208 SKKELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTV 330
+++E + T SH++ L+ R +C P+ V
Sbjct: 60 TRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRV 100
>UniRef50_Q8TW14 Cluster: 50S ribosomal protein L6P; n=3; cellular
organisms|Rep: 50S ribosomal protein L6P - Methanopyrus
kandleri
Length = 204
Score = 46.4 bits (105), Expect = 5e-04
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIR 392
NM KGVT+G +YK++ VY+HFP + + I NF+GE R
Sbjct: 94 NMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPR 139
>UniRef50_Q6E6D2 Cluster: Large subunit ribosomal protein L9e; n=1;
Antonospora locustae|Rep: Large subunit ribosomal
protein L9e - Antonospora locustae (Nosema locustae)
Length = 160
Score = 41.5 bits (93), Expect = 0.015
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH--LAVDIRMVNPRL 183
MK+++ +KV+IP+G +V + R++TV+G R R+ H L +D+ + RL
Sbjct: 1 MKRLLCEEKVEIPEGCSVEILERVMTVRGKRATAVRDLSHFVLTMDVHEGHVRL 54
>UniRef50_Q3ZZN4 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Dehalococcoides
sp. (strain CBDB1)
Length = 182
Score = 38.3 bits (85), Expect = 0.14
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFK 144
+ +K+P G+ V + VTVKGP+G L R+F+
Sbjct: 4 IGKMPIKVPPGIKVDINGNDVTVKGPKGTLSRSFR 38
>UniRef50_A0BWM5 Cluster: Chromosome undetermined scaffold_132,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_132,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 167
Score = 37.1 bits (82), Expect = 0.31
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +1
Query: 94 RLVTVKGPRGVLKRNFKHLAVDIRM 168
+L+ + GPRG+L RNFKH ++DI++
Sbjct: 53 KLIMIIGPRGILNRNFKHASLDIQV 77
>UniRef50_Q9ZAE4 Cluster: 50S ribosomal protein L6; n=4; cellular
organisms|Rep: 50S ribosomal protein L6 - Thermotoga
maritima
Length = 184
Score = 37.1 bits (82), Expect = 0.31
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNF 141
+A + + +P G+TV +K +V VKGP+G L + F
Sbjct: 4 LAKKPIVLPQGVTVEIKDNVVKVKGPKGELSQEF 37
>UniRef50_Q7UN05 Cluster: 50S ribosomal protein L6; n=3;
Planctomycetaceae|Rep: 50S ribosomal protein L6 -
Rhodopirellula baltica
Length = 181
Score = 36.3 bits (80), Expect = 0.55
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKH 147
+ N+ V IP G+TV + R + V+GP+G K +FKH
Sbjct: 4 IGNKPVAIPSGVTVSIADRNIDVEGPKG--KLSFKH 37
>UniRef50_Q48D51 Cluster: 50S ribosomal protein L6; n=6;
Proteobacteria|Rep: 50S ribosomal protein L6 -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 179
Score = 36.3 bits (80), Expect = 0.55
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 171
VA VK+P G+ V + +L++VKGP+G L+ H +V++ +V
Sbjct: 4 VAKNPVKLPSGVEVKLVGQLLSVKGPKGTLEL-IIHSSVEVEIV 46
>UniRef50_A4M9T7 Cluster: 50S ribosomal protein L6; n=3;
Thermotogaceae|Rep: 50S ribosomal protein L6 - Petrotoga
mobilis SJ95
Length = 186
Score = 35.5 bits (78), Expect = 0.96
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNF-KHLAVDIRMVNPRLLK----VEKWF 204
+A++ IPDG+ + V + + +KG G L N ++L VD R N ++K V K
Sbjct: 6 IADKPTIIPDGVELSVDGQTIKIKGKNGELSLNLPEYLEVD-RDNNELMIKTKEGVVKRS 64
Query: 205 GSKKELAAVR-TVCSHVET*LK 267
+K L A+R T SHV +K
Sbjct: 65 SDEKRLKALRGTFTSHVRNMIK 86
>UniRef50_Q11HR7 Cluster: 50S ribosomal protein L6; n=73;
Proteobacteria|Rep: 50S ribosomal protein L6 -
Mesorhizobium sp. (strain BNC1)
Length = 177
Score = 34.7 bits (76), Expect = 1.7
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLK 132
+ + V +P G+T +V ++VT KGP+G LK
Sbjct: 4 IGKKPVPVPQGVTANVDGQVVTAKGPKGELK 34
>UniRef50_Q83ER1 Cluster: 50S ribosomal protein L6; n=108;
Proteobacteria|Rep: 50S ribosomal protein L6 - Coxiella
burnetii
Length = 178
Score = 34.7 bits (76), Expect = 1.7
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL 183
VA +KIP G+ V+V + +TVKG G L R H AV + + L
Sbjct: 5 VAKNPIKIPTGVEVNVAGQQITVKGKLGTLTRVI-HRAVKVTKTDAEL 51
>UniRef50_Q6YR07 Cluster: 50S ribosomal protein L6; n=16;
Firmicutes|Rep: 50S ribosomal protein L6 - Onion yellows
phytoplasma
Length = 184
Score = 34.3 bits (75), Expect = 2.2
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSR-LVTVKGPRGVLKRNFKH 147
V N+ +++P+ + V +K R ++V+GP+G L+ F H
Sbjct: 4 VGNKAIEVPNAVKVDIKDRNFISVEGPKGKLEYQFNH 40
>UniRef50_Q5AEN3 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 140
Score = 33.9 bits (74), Expect = 2.9
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = -2
Query: 458 ND*FILLFWRVNDSHTRCHLYPSDVFLTQEVTYLNN*ITL--SGDTVNGEVSIHSTHLVL 285
N+ FILL R T S+ F TQE++ N +T+ + VN E+ I+ +HLV
Sbjct: 63 NNQFILLSRRNFHGDTFMDFNFSNSFFTQEISNFNVILTIFFNNVNVNWEMRINKSHLVF 122
Query: 284 EAFSYSFNHVS 252
FS + + VS
Sbjct: 123 VTFSDTSDQVS 133
>UniRef50_Q847P4 Cluster: 50S ribosomal protein L6; n=1; Aster
yellows phytoplasma|Rep: 50S ribosomal protein L6 -
Aster yellows phytoplasma
Length = 175
Score = 33.5 bits (73), Expect = 3.9
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
NMIKGV+ GF+ K+ + F N + N I+ + +G + +K+ +T +
Sbjct: 82 NMIKGVSNGFKKKLELIGVGFRAN-INNNNNQILNLN--IGYSHNIMIKLPQSIT-LEVK 137
Query: 435 KQKDELIIRQLFRKMSLALV 494
K+ II + + K L +V
Sbjct: 138 MDKNPQIILKSYDKQLLGIV 157
>UniRef50_Q95S25 Cluster: GM14169p; n=3; Sophophora|Rep: GM14169p -
Drosophila melanogaster (Fruit fly)
Length = 730
Score = 33.5 bits (73), Expect = 3.9
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +1
Query: 187 KVEKWFGSKKELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTVSPLRVIQLLR 360
++E+ G++ E A+++ H+E LKE +K + C+ L SP+ + R+ QLL+
Sbjct: 316 RLEREEGARAEAASLQVKLLHMEQELKEWVKVAQDHCLANTLVSPMALRS-RIEQLLK 372
>UniRef50_Q8ETW8 Cluster: 50S ribosomal protein L6; n=40;
Bacteria|Rep: 50S ribosomal protein L6 - Oceanobacillus
iheyensis
Length = 178
Score = 33.5 bits (73), Expect = 3.9
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEK 198
V + V+IP+G+ + + + VTVKGP+G L R H + I + +L VE+
Sbjct: 4 VGLKPVEIPEGVELKLDNNTVTVKGPKGELSREL-HPDMKIN-IEDNVLTVER 54
>UniRef50_Q8A491 Cluster: 50S ribosomal protein L6; n=34;
Bacteria|Rep: 50S ribosomal protein L6 - Bacteroides
thetaiotaomicron
Length = 189
Score = 33.5 bits (73), Expect = 3.9
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 55 VKIPDGLTVHVKSRLVTVKGPRGVLKR 135
+ IP G+TV +K +VTVKGP+G L +
Sbjct: 9 ISIPAGVTVTLKDDVVTVKGPKGELSQ 35
>UniRef50_A5GIT1 Cluster: 50S ribosomal protein L6; n=7;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain WH7803)
Length = 179
Score = 33.1 bits (72), Expect = 5.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKR 135
+ + IPD ++V + VTVKGP+G LKR
Sbjct: 4 IGKSPIPIPDKVSVSLDGLAVTVKGPKGELKR 35
>UniRef50_UPI0000F2B3FB Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 490
Score = 32.7 bits (71), Expect = 6.7
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = -3
Query: 394 LLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLIMFLHVNRLSSRRQAP 215
LL+ + K + + L +VTQL+ +Y++ +LY P VTPL + L + R Q P
Sbjct: 187 LLLALAGKTSKAHVGSLLWIVTQLLFGNSYSSLLLYLDPRVTPLELLLASLSGAKRAQDP 246
Query: 214 FWIRTIS 194
+ +S
Sbjct: 247 TQSKQVS 253
>UniRef50_Q10YL0 Cluster: ATPase associated with various cellular
activities, AAA_5; n=2; Oscillatoriales|Rep: ATPase
associated with various cellular activities, AAA_5 -
Trichodesmium erythraeum (strain IMS101)
Length = 539
Score = 32.7 bits (71), Expect = 6.7
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 297 RAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIRQLFRK 476
RA+Y +F +C+T ++ +NF Y R K+ ++N+ K D L+I RK
Sbjct: 109 RAIY-NFVTSCITDYHKFLVACKNFSKLPYSREFKIGIITPILNAVKPDDFLLINNKSRK 167
Query: 477 M 479
+
Sbjct: 168 V 168
>UniRef50_A5LSZ6 Cluster: 50S ribosomal protein L6; n=1;
Streptococcus pneumoniae SP9-BS68|Rep: 50S ribosomal
protein L6 - Streptococcus pneumoniae SP9-BS68
Length = 139
Score = 32.7 bits (71), Expect = 6.7
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRM 168
+ N+ + +P G+ + +VTVKGP+G L R F ++IR+
Sbjct: 4 IGNKVIVLPAGVELANNDNVVTVKGPKGELTREFSK-DIEIRV 45
>UniRef50_Q0ID19 Cluster: 50S ribosomal protein L6; n=6;
Bacteria|Rep: 50S ribosomal protein L6 - Synechococcus
sp. (strain CC9311)
Length = 179
Score = 32.7 bits (71), Expect = 6.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 40 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKR 135
+ + IPD + V + VTVKGP+G LKR
Sbjct: 4 IGKNPIPIPDKVNVTLSGLAVTVKGPKGELKR 35
>UniRef50_A0UVM0 Cluster: Signal peptidase I precursor; n=2;
Clostridium|Rep: Signal peptidase I precursor -
Clostridium cellulolyticum H10
Length = 189
Score = 32.3 bits (70), Expect = 8.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 289 YWKPLVTPLIMFLHVNRLSSRRQAPFWIRTISQPSGDE 176
+W ++ PL + V+R S Q FW++ + +GDE
Sbjct: 80 FWDNVIDPLKYNILVSRFSDNNQQVFWVKRVIGKAGDE 117
>UniRef50_Q5FM76 Cluster: 50S ribosomal protein L6; n=10;
Firmicutes|Rep: 50S ribosomal protein L6 - Lactobacillus
acidophilus
Length = 176
Score = 32.3 bits (70), Expect = 8.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 55 VKIPDGLTVHVKSRLVTVKGPRGVLKRNF 141
+++PD +TV + +TVKGP+G L R F
Sbjct: 9 IEVPDSVTVTKEGDNITVKGPKGELTRYF 37
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,346,416
Number of Sequences: 1657284
Number of extensions: 12309679
Number of successful extensions: 30451
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 29541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30432
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -