Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20014
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    91   1e-19
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    90   2e-19
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    29   0.52 
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   3.6  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   4.8  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   6.3  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.3  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   8.4  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   8.4  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 43/68 (63%), Positives = 51/68 (75%)
 Frame = +3

Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
           NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S 
Sbjct: 77  NMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISS 136

Query: 435 KQKDELII 458
             KDE+II
Sbjct: 137 AVKDEIII 144



 Score = 81.4 bits (192), Expect = 9e-17
 Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 3/186 (1%)
 Frame = +1

Query: 31  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 210
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61

Query: 211 KKELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTVSPLR---VIQLLRYVTSWVR 381
           +K  A +RT  S +   +    +    +  L     P+ ++      V+++  ++   + 
Sbjct: 62  RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 382 NTSEG*RWHLV*LSLTLQNKRMN*SLGNSFERCL*LWCSHPATTTVKNKDIRKFLDGLYV 561
              +      V +S  ++++ +    GNS E       +      V+NKDIRKFLDG+YV
Sbjct: 122 RVIKCLPGVTVSISSAVKDEII--IEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYV 179

Query: 562 SEKTTV 579
           SE+  +
Sbjct: 180 SERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 42/68 (61%), Positives = 51/68 (75%)
 Frame = +3

Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSP 434
           NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S 
Sbjct: 77  NMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISS 136

Query: 435 KQKDELII 458
             KDE+I+
Sbjct: 137 AVKDEIIL 144



 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 3/186 (1%)
 Frame = +1

Query: 31  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 210
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61

Query: 211 KKELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTVSPLR---VIQLLRYVTSWVR 381
           +K  A +R+V S +   +    +    +  L     P+ ++      V+++  ++   + 
Sbjct: 62  RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 382 NTSEG*RWHLV*LSLTLQNKRMN*SLGNSFERCL*LWCSHPATTTVKNKDIRKFLDGLYV 561
              +      V +S  ++++ +    GNS E       +      V+NKDIRKFLDG+YV
Sbjct: 122 RVIKCLPGVTVSISSAVKDEII--LEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYV 179

Query: 562 SEKTTV 579
           SE+  +
Sbjct: 180 SERGNI 185


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +3

Query: 360 IRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIRQLFRKMSLALVLSSSNY 512
           I NF+ ++YIRR+      +V++  K+  + IIR+ F  + L  +L  SN+
Sbjct: 363 IANFIMQRYIRRLGRKEIGSVIDELKKNTDNIIRKSFLPV-LRTLLEKSNH 412


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 240 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 94
           D P+G     GS  F+      V+H+N N+   ++  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 582 HNSCFLRYIKTIQELSDILILD 517
           H S  L Y KT++E++ + I+D
Sbjct: 796 HQSSLLPYFKTLKEIAHLFIID 817


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 234 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 112
           PH GK    S   +N  E+R   A+V+S   + PF    GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 224 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 114
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +1

Query: 58   KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 225
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 226  AVRTVCS 246
             + T+CS
Sbjct: 1623 VLATICS 1629


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 311 SIHSTHLVLEAFSYSFNHVSTCEQTVLTAASSFLDPNHFSTFRRRGF 171
           S  S H ++E   +  +HV  C  + +    + LDP+ F    R+ +
Sbjct: 86  SYESVHSMIERLPFCPDHVVHCAGSCIPGFFTELDPSVFEKQMRQNY 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,588
Number of Sequences: 5004
Number of extensions: 53449
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)