Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20014
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   109   1e-24
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  109 bits (262), Expect = 1e-24
 Identities = 70/194 (36%), Positives = 105/194 (54%), Gaps = 6/194 (3%)
 Frame = +1

Query: 28  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 207
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 208 SKKELAAVRTVCSHVET*LKE*LKASNTRCVLCMLTSPLTVS---PLRVIQLLRYV-TSW 375
            +KELAA+RTVCSH++  +K        +        P+ V+     R +++  ++    
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120

Query: 376 VRNT--SEG*RWHLV*LSLTLQNKRMN*SLGNSFERCL*LWCSHPATTTVKNKDIRKFLD 549
           VR     EG     V  +++   K      GN  +           +T VK KDIRKFLD
Sbjct: 121 VRRVPLPEG-----VIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLD 175

Query: 550 GLYVSEKTTVVLDD 591
           G+YVSEKTT+V  D
Sbjct: 176 GIYVSEKTTIVPTD 189



 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 42/69 (60%), Positives = 52/69 (75%)
 Frame = +3

Query: 252 RNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 431
           +NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S
Sbjct: 76  KNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATIS 135

Query: 432 PKQKDELII 458
             QKDE+++
Sbjct: 136 TAQKDEIVV 144


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 270  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 407
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 410 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 276
           RC L   ++F +  +T LNN + + GD +++  +   S   VL  F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 156 NSQVFEVPFENSAGPFNCHQTRFHMDR 76
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 156 NSQVFEVPFENSAGPFNCHQTRFHMDR 76
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,229,063
Number of Sequences: 27780
Number of extensions: 303528
Number of successful extensions: 793
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)