Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20013
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.050
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.8  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   7.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 0.050
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 165 LSCIYMSYKYYIYMFFFASCIFYSXXXXXXXXXXXF--TILVRICVSYLCIQFFLVP 1
           L CIY  Y YY+++ F  + I ++           F   +++ +C+ Y C  F + P
Sbjct: 255 LVCIY--YFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYYFCRAFIIFP 309



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 165 LSCIYMSYKYYIYMFFFASCIFY 97
           L CIY    Y++   FF  CI+Y
Sbjct: 130 LLCIY----YFVVPLFFLLCIYY 148


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 420  PHQSCLEQNFCVQGH 376
            PH+SC     CV GH
Sbjct: 1214 PHESCSSFYVCVNGH 1228


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 205 VDKRTLEKYEREAREKSENHGTYHGH 282
           ++  T  K +REA ++ E+  ++H +
Sbjct: 876 LENHTSVKIKREAEDRDEDERSFHSN 901


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 49  EDGELTKKIPKKKPPRVEDTRSKKEHVN 132
           ++ E TKK  KKK   +++  ++ E +N
Sbjct: 253 DEDEDTKKEDKKKKKTIKEKYTEDEELN 280



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 66  KKDSKEKTTTSRRYTKQKRTCK 131
           K+D K+K T   +YT+ +   K
Sbjct: 260 KEDKKKKKTIKEKYTEDEELNK 281


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 418 PPIMFGTKLLCPGASRIVKCFFSV 347
           PPI+  T+ +C    ++ + FF +
Sbjct: 103 PPILHDTQPMCNPQLQVPRTFFKI 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,987
Number of Sequences: 336
Number of extensions: 3447
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)