Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20008
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 81 8e-16
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 81 1e-15
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 75 4e-14
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 31 0.67
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.89
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 30 1.6
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 29 4.8
01_01_1106 + 8750597-8754031 29 4.8
04_04_0188 - 23433753-23436572 28 6.3
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 6.3
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 81.0 bits (191), Expect = 8e-16
Identities = 38/66 (57%), Positives = 49/66 (74%)
Frame = +2
Query: 506 HVTKLVEKKKAQLWSSLMMLIPLSWFLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTC 685
HVT L+E+ KAQL + P+ ++LPALCRKM VPYCIVKGK+RLG++VH+KT +
Sbjct: 134 HVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASV 193
Query: 686 LALTNV 703
L LT V
Sbjct: 194 LCLTTV 199
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/55 (61%), Positives = 43/55 (78%)
Frame = +3
Query: 234 LVQICKMPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 398
L + K PK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +1
Query: 169 NPLFEKRPKNFAIGQGIQPTRDLSRFVRCPSI 264
NPLFEKRPK F IG + P +DL RFV+ P +
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 53
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 80.6 bits (190), Expect = 1e-15
Identities = 37/66 (56%), Positives = 49/66 (74%)
Frame = +2
Query: 506 HVTKLVEKKKAQLWSSLMMLIPLSWFLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTC 685
HVT L+E+ KAQL + P+ ++LPALCRKM +PYCIVKGK+RLG++VH+KT +
Sbjct: 119 HVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASV 178
Query: 686 LALTNV 703
L LT V
Sbjct: 179 LCLTTV 184
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/55 (47%), Positives = 39/55 (70%)
Frame = +3
Query: 234 LVQICKMPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 398
L + + PK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 45 LHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 22/30 (73%)
Frame = +1
Query: 169 NPLFEKRPKNFAIGQGIQPTRDLSRFVRCP 258
NPLFEKRPK F IG + P +DL RFVR P
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/55 (61%), Positives = 43/55 (78%)
Frame = +3
Query: 234 LVQICKMPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 398
L + K PK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +1
Query: 169 NPLFEKRPKNFAIGQGIQPTRDLSRFVRCPSI 264
NPLFEKRPK F IG + P +DL RFV+ P +
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 37
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/66 (39%), Positives = 35/66 (53%)
Frame = +2
Query: 506 HVTKLVEKKKAQLWSSLMMLIPLSWFLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTC 685
HVT L+E+ KAQL + P+ ++LPALCRKM +VH+KT +
Sbjct: 118 HVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASV 163
Query: 686 LALTNV 703
L LT V
Sbjct: 164 LCLTTV 169
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +2
Query: 503 KHVTKLVEKKKAQLWSSLMMLIPLSWFLFLPALCRKMGVPYCIVKGKSRL--GALVHRKT 676
K V K + + + L + P+ +P LC + +PY V K L R T
Sbjct: 50 KEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPT 109
Query: 677 CTCLALT 697
C L LT
Sbjct: 110 CCVLVLT 116
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 266 PHPAPEGCTSASSESAPSDQP 328
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = +2
Query: 503 KHVTKLVEKKKAQLWSSLMMLIPLSWFLFLPALCRKMGVPYCIVKGKSRL--GALVHRKT 676
K V K + + L + P+ +P LC + +PY V K L R T
Sbjct: 50 KEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPT 109
Query: 677 CTCLALT 697
C L +T
Sbjct: 110 CCVLVMT 116
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 282 SGAGCGYTWASYKSGQVPSWLNALTNGKVLWPLLEERIHDLLG 154
+GAG GY W S+++ +W A+ K LW L + L G
Sbjct: 105 TGAGQGYLWMSHRTPGSDTWELAV-RSKQLWEELAAEVDGLGG 146
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 577 LVSLPASVMP*NGRTILHCQG----QVPPRCTCTPQDMHMLSSNKCG 705
LV+LP+S+ +L+ +G ++ P C+ Q++H L+ ++CG
Sbjct: 530 LVTLPSSIGTLQSLHLLNLKGCGNLEILPDTICSLQNLHFLNLSRCG 576
>04_04_0188 - 23433753-23436572
Length = 939
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 219 SANSGLVQICKMPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 347
SA + L Q+CK RQ A R + PPP + + LD
Sbjct: 21 SAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLD 63
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 214 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 122
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,984,210
Number of Sequences: 37544
Number of extensions: 394406
Number of successful extensions: 1483
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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