Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20007
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 87 3e-18
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 44 3e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 41 2e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 34 0.023
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 34 0.023
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 33 0.031
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 32 0.072
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 31 0.22
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.29
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 29 0.67
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 28 1.5
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 28 1.5
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 28 1.5
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 27 2.0
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 26 6.2
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 26 6.2
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 26 6.2
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 6.2
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy... 25 8.2
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 86.6 bits (205), Expect = 3e-18
Identities = 45/89 (50%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = +2
Query: 248 GSLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 427
G +S WRGN ANV+RYFPTQALNFAFKDK+K++F G ++ + ++F
Sbjct: 86 GVISLWRGNTANVLRYFPTQALNFAFKDKFKKMF-GYKKERDGYAKWFAGNLASGGAAGA 144
Query: 428 TSLCFVYPLDFARTRLAADV--GKGDGQR 508
SL FVY LD+ARTRLA D K G+R
Sbjct: 145 ASLLFVYSLDYARTRLANDAKSAKKGGER 173
Score = 61.7 bits (143), Expect = 1e-10
Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 251
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86
Query: 252 L 254
+
Sbjct: 87 V 87
Score = 35.5 bits (78), Expect = 0.008
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 511 FSGLGNCISKIFKSDGLIGLYRGFG 585
F+GL + K ++SDGL GLYRGFG
Sbjct: 175 FNGLVDVYRKTYRSDGLRGLYRGFG 199
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +3
Query: 75 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 254
FA + +GG + A S V ++ + L S + ++++ G+VD + + + GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 600 IIIYRASYFGFYDTAR 647
I++YR YFG YDT +
Sbjct: 205 IVVYRGLYFGMYDTLK 220
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 511 FSGLGNCISKIFKSDGLIGLYRG 579
+ G+G C + +G+I L+RG
Sbjct: 71 YKGIGECFKRTAAEEGVISLWRG 93
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/55 (38%), Positives = 36/55 (65%)
Frame = +3
Query: 90 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 254
L+GG++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGL 72
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 511 FSGLGNCISKIFKSDGLIGLYRGFG 585
++ L + + KI+ +GLIG +RG G
Sbjct: 56 YTSLTSTLVKIWNREGLIGFFRGNG 80
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +3
Query: 81 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 254
K +AGG + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75
Score = 30.7 bits (66), Expect = 0.22
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +2
Query: 248 GSLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 427
G ++G+ A + R FP + F ++ ++V + + +T R+
Sbjct: 74 GLHGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLIRDPEHETHARRFLSGSLAGTC---- 129
Query: 428 TSLCFVYPLDFARTRLA 478
S+ F YPL+ R RLA
Sbjct: 130 -SVFFTYPLELIRVRLA 145
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 33.9 bits (74), Expect = 0.023
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 63 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLL 161
DP F++GGI+ VS+T AP++R+K++L
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML 155
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +3
Query: 87 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSK 182
+LAGG++ +V++ + P++ +K +Q +S+
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 33.9 bits (74), Expect = 0.023
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 87 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGL 254
FL+GG++A + T P E +K Q+Q ++K + + YK + AF I + +G+
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGI 83
Score = 28.7 bits (61), Expect = 0.88
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 526 NCISKIFKSDGLIGLYRGFG 585
+CI K +S+G LY+GFG
Sbjct: 271 DCILKTIRSEGFFALYKGFG 290
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 33.5 bits (73), Expect = 0.031
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 72 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 248
+F KDFLA G+S V++ V P + VK+ LQ Q I Y +D +I K +
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69
Query: 249 GL--FHSGVV 272
GL F+ G V
Sbjct: 70 GLAAFYKGTV 79
Score = 33.1 bits (72), Expect = 0.041
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +3
Query: 66 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKE 245
PV + +++G IS + V P+E V++ LQ+Q K + Y G D +I +
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163
Query: 246 QGLFHSGVV 272
GL SG++
Sbjct: 164 YGL--SGIM 170
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 32.3 bits (70), Expect = 0.072
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 517 GLGNCISKIFKSDGLIGLYRGFG 585
G+ + + ++KS+GL+GL+RGFG
Sbjct: 283 GIRHVLGGLYKSEGLLGLFRGFG 305
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 72 AFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQG 251
A++ +AGGI A + + ++ VK Q + +Y G+V + I E+G
Sbjct: 14 AYSHVLIAGGIGGATADFLMHSLDTVKTRQQAALYTN------KYNGMVKCYSTILCEEG 67
Query: 252 LFH 260
+FH
Sbjct: 68 VFH 70
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 30.7 bits (66), Expect = 0.22
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 90 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVD 221
++GG+S A++ + P++ VK LLQ + S I ++ KG +D
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLD 251
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/57 (22%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 90 LAGGISAAVSKTAVAPIERVKLLLQVQH-VSKQIAADQRYKGIVDAFVRIPKEQGLF 257
LAG S + + + P++ +K +Q+ + VS+ ++ + IV++ ++I +G++
Sbjct: 24 LAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGN-----IVNSVIKISSTEGVY 75
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 24 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQ 164
V +T +N SN P + F+AGG++ + A AP++ VK LQ
Sbjct: 32 VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.67
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 90 LAGGISAAVSKTAVAPIERVKLLLQVQHVS 179
LAGGIS+ + + +AP + +K+ +Q+ S
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS 50
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 476 AADVGKGDGQRNSPVSETASARSSSP 553
+A+ K DG+ SPVSE++S +SP
Sbjct: 4 SAEQAKKDGKDQSPVSESSSVGGTSP 29
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -1
Query: 515 ENYAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQRRR 351
+++ P R R RD RS +RS R HR DY RS ++ + RR
Sbjct: 138 DSHQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRR 189
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 81 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ 170
KD +AGG + S VAP++ VK Q Q
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 78 AKDFLAGGISAAVSKTAVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQ 248
A L G + V P E +K+ LQ V++ SK Y G VD F +I K++
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQE 155
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 443 VYPLDFARTRLAADVGKGD 499
+YPLD +TR+ VGK D
Sbjct: 26 LYPLDVVKTRMQLSVGKSD 44
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 511 FSGLGNCISKIFKSDGLIGLYRG 579
++G +C+ KI K++G LYRG
Sbjct: 45 YNGTFDCLKKIVKNEGPHRLYRG 67
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 517 GLGNCISKIFKSDGLIGLYRG 579
G+ I I+K++G+ GLYRG
Sbjct: 245 GIMQTIMSIYKNNGIKGLYRG 265
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 511 FSGLGNCISKIFKSDGLIGLYRG 579
F + +C K++GL GLYRG
Sbjct: 50 FPTIRSCFQNAVKNEGLKGLYRG 72
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 526 NCISKIFKSDGLIGLYRGF 582
N IS + +S+GL G YRG+
Sbjct: 121 NTISTLARSEGLKGFYRGY 139
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 229 TKASTIPL*RWSAAICLLTCCTWSSSLTRSIGATAV 122
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 648 GMLPDPKNTPIV 683
GMLPDPK+ P++
Sbjct: 89 GMLPDPKSIPVI 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,355
Number of Sequences: 5004
Number of extensions: 43012
Number of successful extensions: 187
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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