Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20007
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 9e-16
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 53 3e-07
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.019
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.033
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 33 0.18
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 32 0.41
SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20) 32 0.54
SB_5749| Best HMM Match : Gpi1 (HMM E-Value=7.8) 32 0.54
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.71
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061) 31 0.71
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.94
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.94
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 31 1.2
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 30 2.2
SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 30 2.2
SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 29 2.9
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 2.9
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 29 3.8
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 29 3.8
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 29 5.0
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 6.6
SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17) 28 6.6
SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 81.0 bits (191), Expect = 9e-16
Identities = 49/90 (54%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = +2
Query: 248 GSLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRY-FXXXXXXXXXXX 424
G LSFWRGN AN IRYFPTQALNFAFKD+ K +F KKT F
Sbjct: 68 GFLSFWRGNLANCIRYFPTQALNFAFKDQVKALF---KPKKTDSNAIKFSKNIASGGAAG 124
Query: 425 XTSLCFVYPLDFARTRLAAD--VGKGDGQR 508
SL FVY LD+ RTRLA D VGK G+R
Sbjct: 125 AMSLFFVYSLDYCRTRLANDAKVGKKGGER 154
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +3
Query: 75 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 251
F ++F G +A +SKTA APIERVKLL+Q Q + K D YKG++D R + +G
Sbjct: 9 FVENFGLSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEG 68
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 511 FSGLGNCISKIFKSDGLIGLYRGF 582
F+G+ + K SDGL+GLYRGF
Sbjct: 156 FNGMIDVYKKTIASDGLVGLYRGF 179
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 600 IIIYRASYFGFYDTARGMLPDPKNTPIVISW 692
II+YR YFG YDT + +L ++ +VIS+
Sbjct: 186 IIVYRGFYFGLYDTLKPILLG-EDAGVVISF 215
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/58 (44%), Positives = 42/58 (72%)
Frame = +3
Query: 81 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 254
K LAGGI+ AVS+T+V+P+ERVK+LLQ+Q + ++KG++ ++I KE+G+
Sbjct: 36 KHLLAGGIAGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGI 87
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 179 QADRRRPALQGYRRRLRPHPQGAGSLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 343
Q + P +G L + G L +++GN NVIR FP A+ FA ++YK+
Sbjct: 63 QIQVKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVIRIFPYSAVQFAAYEEYKK 117
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 48 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDA 224
MS + F ++F G +A +SKTA APIERVKLL+Q Q + K YKG+VD
Sbjct: 1 MSGKKQNLHFVENFALSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDC 60
Query: 225 FVRIPKEQGL 254
+R + +G+
Sbjct: 61 TMRTYRAEGI 70
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 96 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 254
GG A VS+TA AP++R+K+LLQVQ A+ GIV F + +E G+
Sbjct: 143 GGALAGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGI 189
Score = 35.5 bits (78), Expect = 0.044
Identities = 30/92 (32%), Positives = 40/92 (43%)
Frame = +2
Query: 203 LQGYRRRLRPHPQGAGSLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFW 382
+ G++ LR G S WRGN ANVI+ P + F +K K+ L G D K
Sbjct: 177 VSGFKMMLRE----GGIKSLWRGNGANVIKIAPESGIKFFAYEKAKK--LVGSDTKALGV 230
Query: 383 RYFXXXXXXXXXXXXTSLCFVYPLDFARTRLA 478
TS +YPL+ +TRLA
Sbjct: 231 TDRLLAGSMAGVASQTS---IYPLEVLKTRLA 259
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +3
Query: 45 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ---HVSKQIAADQRYKGI 215
K+ N P + G +S +SK + P + +K +QVQ + Q+Y G+
Sbjct: 19 KVHNPYKPADVIESLTCGALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGV 78
Query: 216 VDAFVRIPKEQG 251
D F I KE+G
Sbjct: 79 KDCFRTILKEEG 90
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 36.7 bits (81), Expect = 0.019
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 90 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 254
LAG S ++ V P E +K L VQHV+K ++ YKG+ A I +E+G+
Sbjct: 157 LAGTSSTLIAMVTVYPCEVIKTRLTVQHVNK---SNAHYKGMRHALKTILREEGI 208
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +3
Query: 69 VAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 248
+ + + FL GG SA ++++ +P+E VK+L QV + G++ F + K +
Sbjct: 56 ITWFQSFLCGGTSAVLARSLTSPLEVVKVLAQV-------GTQEAKPGLIRTFASVYKRE 108
Query: 249 GL 254
G+
Sbjct: 109 GI 110
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 248 GSLSFWRGNFANVIRYFPTQALNFA 322
G +FW+GN + IR FP A+ +A
Sbjct: 109 GIKAFWKGNGVSCIRLFPYSAVQYA 133
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 35.9 bits (79), Expect = 0.033
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Frame = +3
Query: 63 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAA---------DQRYKGI 215
DP K F + GI+A++++ A PI+ K+ LQ+Q S +A+ D Y+G+
Sbjct: 11 DPSILVK-FCSAGIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGM 69
Query: 216 VDAFVRIPKEQGL 254
+ V + K +G+
Sbjct: 70 LGTMVTLFKTEGM 82
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +3
Query: 132 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 254
AP ERVK LLQVQ K+ RY+G+ D +++ + GL
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGL 216
Score = 31.9 bits (69), Expect = 0.54
Identities = 9/25 (36%), Positives = 20/25 (80%)
Frame = +1
Query: 511 FSGLGNCISKIFKSDGLIGLYRGFG 585
+ GLG+C+ +++++ GL G+++G G
Sbjct: 200 YQGLGDCLLQVYRTGGLRGVFKGLG 224
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 102 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQG 251
I A TAV PI+ VK +Q Q + A++ YK +D F ++ + +G
Sbjct: 922 IKKATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEG 969
>SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20)
Length = 551
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 531 HQQDLQVRRSDWSVQRFRCVRASIIIYRASYFGFYDTARGMLPDPKNTPIVISWASLR 704
H +D +R + +V+ FR S II G+Y A + D K I SWA+L+
Sbjct: 147 HARDNDLRSNTTTVRAFRYSAMSFIIIHLFACGWYYLACDNMADGKGKCITKSWANLK 204
>SB_5749| Best HMM Match : Gpi1 (HMM E-Value=7.8)
Length = 226
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 531 HQQDLQVRRSDWSVQRFRCVRASIIIYRASYFGFYDTARGMLPDPKNTPIVISWASLR 704
H +D +R + +V+ FR S II G+Y A + D K I SWA+L+
Sbjct: 167 HARDNDLRSNTTTVRAFRYSAMSFIIIHLFACGWYYLACDNMADGKGKCITKSWANLK 224
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 31.5 bits (68), Expect = 0.71
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 39 SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIV 218
S K+ DP + AG I+ + + P++RVK +LQ++ + Y G V
Sbjct: 126 SYKLPVSKDP-ELLRSLAAGMIAGVATSFVLTPLDRVKCILQIE----KAFGGSSYGGPV 180
Query: 219 DAFVRIPKEQGL 254
D RI +E G+
Sbjct: 181 DCLRRIYREAGV 192
>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
Length = 114
Score = 31.5 bits (68), Expect = 0.71
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 99 GISAAVSKTAVAPIERVKLLLQVQH 173
G+S +KT AP+ER+K+L Q Q+
Sbjct: 63 GLSTCCAKTTTAPLERLKILFQAQN 87
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 31.1 bits (67), Expect = 0.94
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +3
Query: 87 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 254
F+ GG++ AVS+T P++ V+ +Q ++ + +Y ++ V + K+ G+
Sbjct: 176 FVCGGVAGAVSQTIAYPLDVVRRRMQ---LAGAVPDGHKYNTCINTLVNVYKDDGI 228
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 31.1 bits (67), Expect = 0.94
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 51 SNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFV 230
SNL A +AGG + VS + P + +K +Q + RYKG++D +
Sbjct: 124 SNLFGSRGVATYLMAGGFAGVVSWASTFPFDVIKSRIQADGNLGKF----RYKGMMDCAL 179
Query: 231 RIPKEQGL 254
+ KE+G+
Sbjct: 180 QSYKEEGM 187
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 511 FSGLGNCISKIFKSDGLIGLYRGFG 585
+SG+G ++KI++ +GL G ++G G
Sbjct: 591 YSGVGGTLAKIYRDEGLYGYFKGNG 615
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 248 GSLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 343
G +++GN N++R P A+ FA +++K+
Sbjct: 606 GLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKK 637
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 93 AGGISAAVSKTAVAPIERVKLLLQ 164
AGG++ S+T AP+E++K++ Q
Sbjct: 175 AGGVAGVASRTLTAPLEKMKIIAQ 198
>SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 609
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 531 HQQDLQVRRSDWSVQRFRCVRASIIIYRASYFGFYDTARGMLPDPKNTPI 680
H+ ++RS +F +A + + SY G TA G+ PDP+ +P+
Sbjct: 524 HKMIAVLKRSREIGLKFNPRKAKLRVPEVSYVGHLFTADGLKPDPEKSPM 573
>SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 485 HRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTAS-SC 363
+ RD RS+ +R++ RWL R R+P S+ R++S SC
Sbjct: 6 NNNRDN-TRSQVRSRNSNRWLLRQQRQPQRHLSHKRSSSNSC 46
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = -1
Query: 485 HRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSCQRRRGTPACTCP 327
HR+ + RSR R R+ R R +SSC+RRR P
Sbjct: 275 HRKHRSHSRSRSPRSKRSRSPRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSP 327
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 90 LAGGISAAVSKTAVA--PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLF 257
LA G+ A VS+ V P+E +K V+ + Q + +YKG I K +G F
Sbjct: 140 LASGLGAGVSEAVVVVCPMETIK----VKFIHDQTQPNPKYKGFFSGVRTILKTEGFF 193
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 395 QRSNARTASSCQRRRGTPACTCP 327
Q + R S CQRRRG C CP
Sbjct: 934 QLVSCRFYSKCQRRRGGAQCVCP 956
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 263 WRGNFANVIRYFPTQALNFAFKDKYKQV 346
W G F++VI F A+N AF+++YK++
Sbjct: 282 WIGAFSSVINPFIYGAMNPAFREEYKKI 309
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 87 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLF 257
F A IS + A P++ K +Q + I YKG +D RI + +G+F
Sbjct: 97 FGASMISGLATTVASMPVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVF 150
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 526 NCISKIFKSDGLIGLYRGFG 585
+C I++ +G+ G YRGFG
Sbjct: 332 DCFRTIYQQEGIFGFYRGFG 351
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 511 FSGLGNCISKIFKSDGLIGLYRG 579
++G +C+ K+F S+GL G +RG
Sbjct: 297 YTGSLDCLKKVFHSEGLRGCFRG 319
>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 549 LEDLADAVSETGELRWPSPLPTSAARRVRAKSRGYTK 439
L+D+ A+S T + P +PT A R V +S G T+
Sbjct: 150 LQDMTLAISSTPQTLSPVSVPTPATRSVLKRSPGKTR 186
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 476 RDGYVRSRGGTRSTERWLRRHHRRPDY-QRSNARTASSCQR 357
+DG V +RG TR + R H RR + R + R +S+ R
Sbjct: 591 QDGQVTTRGHTRRSSNTTRSHTRRSSHTTRGHTRRSSNTTR 631
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 482 RRRDGYVRSRGGTRSTERWLRRHHR-RPDYQRSNARTASSCQRRRGTP 342
R+ + R +GG R+T+ ++H R +PD +R+ R R+GTP
Sbjct: 865 RKVEERARHKGGNRATQEREKKHRRNQPDKRRTQMRIP-----RKGTP 907
>SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17)
Length = 890
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 531 HQQDLQVRRSDWSVQRFRCVRASIIIYRASYFGFYDTARGMLPDPK--NTPIVISWASLR 704
H+ ++RS +F +A + + SY G TA G+ PDP+ P+ +L
Sbjct: 334 HKMIAVLKRSREIGLKFNPRKAKLRVPEVSYVGHLFTADGLKPDPEKDERPVAFGSKTLS 393
Query: 705 P*HSR 719
P +R
Sbjct: 394 PAETR 398
>SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 236 PQGAGSLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 346
P+ L W G ++VI F A+N F+D+YK++
Sbjct: 140 PREVYVLYTWLGTLSSVINPFIYGAMNPVFRDEYKKL 176
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,988,684
Number of Sequences: 59808
Number of extensions: 380544
Number of successful extensions: 1441
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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