Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20007
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   145   4e-37
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   145   4e-37
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  145 bits (351), Expect = 4e-37
 Identities = 68/91 (74%), Positives = 71/91 (78%)
 Frame = +2

Query: 236 PQGAGSLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXX 415
           P+  G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF        
Sbjct: 64  PKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGG 123

Query: 416 XXXXTSLCFVYPLDFARTRLAADVGKGDGQR 508
               TSLCFVYPLDFARTRLAADVGK  G+R
Sbjct: 124 AAGATSLCFVYPLDFARTRLAADVGKAGGER 154



 Score =  122 bits (294), Expect = 3e-30
 Identities = 56/68 (82%), Positives = 64/68 (94%)
 Frame = +3

Query: 48  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 227
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 228 VRIPKEQG 251
           VRIPKEQG
Sbjct: 61  VRIPKEQG 68



 Score = 65.7 bits (153), Expect = 4e-13
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +3

Query: 600 IIIYRASYFGFYDTARGMLPDPKNTPIVISW 692
           IIIYRA+YFGFYDTARGMLPDPK TP +ISW
Sbjct: 186 IIIYRAAYFGFYDTARGMLPDPKKTPFLISW 216



 Score = 50.4 bits (115), Expect = 2e-08
 Identities = 19/25 (76%), Positives = 24/25 (96%)
 Frame = +1

Query: 511 FSGLGNCISKIFKSDGLIGLYRGFG 585
           F+GLGNC++KIFK+DG+ GLYRGFG
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFG 180


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  145 bits (351), Expect = 4e-37
 Identities = 68/91 (74%), Positives = 71/91 (78%)
 Frame = +2

Query: 236 PQGAGSLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXX 415
           P+  G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF        
Sbjct: 64  PKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGG 123

Query: 416 XXXXTSLCFVYPLDFARTRLAADVGKGDGQR 508
               TSLCFVYPLDFARTRLAADVGK  G+R
Sbjct: 124 AAGATSLCFVYPLDFARTRLAADVGKAGGER 154



 Score =  122 bits (294), Expect = 3e-30
 Identities = 56/68 (82%), Positives = 64/68 (94%)
 Frame = +3

Query: 48  MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 227
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 228 VRIPKEQG 251
           VRIPKEQG
Sbjct: 61  VRIPKEQG 68



 Score = 65.7 bits (153), Expect = 4e-13
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +3

Query: 600 IIIYRASYFGFYDTARGMLPDPKNTPIVISW 692
           IIIYRA+YFGFYDTARGMLPDPK TP +ISW
Sbjct: 186 IIIYRAAYFGFYDTARGMLPDPKKTPFLISW 216



 Score = 50.4 bits (115), Expect = 2e-08
 Identities = 19/25 (76%), Positives = 24/25 (96%)
 Frame = +1

Query: 511 FSGLGNCISKIFKSDGLIGLYRGFG 585
           F+GLGNC++KIFK+DG+ GLYRGFG
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFG 180


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = -1

Query: 536 LMQFPRPENYAGHLPYRHRRRDGYVRSRGGTRSTERW 426
           L++F  PE    H P RH RR          R    W
Sbjct: 72  LLRFENPET---HHPIRHGRRQSRSMDLNAHREQMSW 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,793
Number of Sequences: 438
Number of extensions: 3150
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)