Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20005
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 132 7e-32
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 121 1e-28
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 103 2e-23
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 82 1e-16
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 74 3e-14
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 73 6e-14
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 72 8e-14
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 71 1e-13
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 70 3e-13
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 58 1e-09
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 55 1e-08
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 54 2e-08
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 54 2e-08
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 53 4e-08
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 53 5e-08
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 50 3e-07
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 48 1e-06
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 43 5e-05
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 42 1e-04
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 41 2e-04
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 40 5e-04
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 29 0.96
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 28 1.3
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 2.9
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 27 2.9
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 26 5.1
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 26 5.1
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 6.7
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 26 6.7
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 6.7
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.7
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 6.7
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 8.9
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 132 bits (318), Expect = 7e-32
Identities = 61/75 (81%), Positives = 69/75 (92%)
Frame = +2
Query: 29 KTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIW 208
K+YD L KLLLIGDSGVGK+ +L RFSED+F SFI+TIGIDFKIRTI+LDGK++KLQIW
Sbjct: 4 KSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIW 63
Query: 209 DTAGQERFRTITTAY 253
DTAGQERFRTITTAY
Sbjct: 64 DTAGQERFRTITTAY 78
Score = 108 bits (260), Expect = 7e-25
Identities = 46/84 (54%), Positives = 69/84 (82%)
Frame = +1
Query: 256 RGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERGEQ 435
RG+MGI+L+YDVT++KSF+N++ W N+E++AS +V K+++GNKCD + QRQVS E+G+
Sbjct: 80 RGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQA 139
Query: 436 LAIEYQIKFVETSAKDSLNVEYAF 507
LA E +KF+E SAK ++NV+ AF
Sbjct: 140 LADELGVKFLEASAKTNVNVDEAF 163
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 121 bits (291), Expect = 1e-28
Identities = 55/77 (71%), Positives = 66/77 (85%)
Frame = +2
Query: 23 MAKTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQ 202
M YD LFKLLLIGDSGVGK+ +L RF++D + S+ISTIG+DFKIRT +L+GK VKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 203 IWDTAGQERFRTITTAY 253
IWDTAGQERFRTIT++Y
Sbjct: 61 IWDTAGQERFRTITSSY 77
Score = 83.4 bits (197), Expect = 3e-17
Identities = 38/88 (43%), Positives = 58/88 (65%)
Frame = +1
Query: 244 NSILRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKE 423
+S RG+ GI++VYDVT++ SF N+K W++ I+ A V ++++GNK D+ ++ V
Sbjct: 75 SSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYS 134
Query: 424 RGEQLAIEYQIKFVETSAKDSLNVEYAF 507
++ A I F+ETSAKDS NVE AF
Sbjct: 135 VAKEFADSLNIPFLETSAKDSTNVEQAF 162
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 103 bits (248), Expect = 2e-23
Identities = 47/73 (64%), Positives = 58/73 (79%)
Frame = +2
Query: 35 YDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDT 214
YD LFK +LIGDSGVGK+++L RF+ + FNI STIG++F R I LD KK+K QIWDT
Sbjct: 7 YDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDT 66
Query: 215 AGQERFRTITTAY 253
AGQER+R IT+AY
Sbjct: 67 AGQERYRAITSAY 79
Score = 85.0 bits (201), Expect = 1e-17
Identities = 36/84 (42%), Positives = 57/84 (67%)
Frame = +1
Query: 256 RGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERGEQ 435
RG++G ++VYD+T + SF+N+ W++ + E+A +++ M++GNK DL R VS E +
Sbjct: 81 RGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQA 140
Query: 436 LAIEYQIKFVETSAKDSLNVEYAF 507
A E + F+ETSA D+ NVE AF
Sbjct: 141 FAAENNLSFIETSAMDASNVEEAF 164
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 81.8 bits (193), Expect = 1e-16
Identities = 35/69 (50%), Positives = 53/69 (76%)
Frame = +2
Query: 47 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 226
FKL+ +G+ VGKTS++ RF D F+ ++ +TIGIDF +T+ L+ + V+LQ+WDTAGQE
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 227 RFRTITTAY 253
RFR++ +Y
Sbjct: 72 RFRSLIPSY 80
Score = 75.4 bits (177), Expect = 8e-15
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = +1
Query: 247 SILRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKER 426
S +R S ++VYD+TN SF N + WI ++ DV +++GNK DL +RQV++E
Sbjct: 79 SYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEE 138
Query: 427 GEQLAIEYQIKFVETSAKDSLNVEYAF 507
GE+ A E +I +ETSAK NV+ F
Sbjct: 139 GEKKAKELKIMHMETSAKAGHNVKLLF 165
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 73.7 bits (173), Expect = 3e-14
Identities = 32/70 (45%), Positives = 51/70 (72%)
Frame = +2
Query: 44 LFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQ 223
L K++++G+SGVGKTSI+ ++ F+ + +TIG DF + + +D K V LQ+WDTAGQ
Sbjct: 8 LLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQ 67
Query: 224 ERFRTITTAY 253
ERF+++ A+
Sbjct: 68 ERFQSLGVAF 77
Score = 55.6 bits (128), Expect = 7e-09
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 RGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEK----MILGNKCDLDSQ-RQVSK 420
RG+ +LVYDV N KSFE + +W AS + ++LGNK D++ Q R VSK
Sbjct: 79 RGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMVSK 138
Query: 421 ERGEQLA-IEYQIKFVETSAKDSLNVEYAF 507
+ +I + ETSAK+++NV+ AF
Sbjct: 139 SKALAFCQARGEIPYFETSAKEAINVQEAF 168
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 72.5 bits (170), Expect = 6e-14
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 229
K++++GDSGVGKT ++ +F F+ + +TIG DF + + +D K V LQ+WDTAGQER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 230 FRTITTAY 253
F+++ A+
Sbjct: 70 FQSLGMAF 77
Score = 41.9 bits (94), Expect = 1e-04
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Frame = +1
Query: 256 RGSMGIMLVYDVTNEKSFENIKNWIRNIEENASAD---VEKMILGNKCDLD-SQRQVSKE 423
RG+ ++VY+V N KSF++++NW + S D +I+GN+ D D S+R VS
Sbjct: 79 RGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKDASKRAVSLH 138
Query: 424 RG-EQLAIEYQIKFV--ETSAKDSLNVEYAF 507
R + ++ + E SAK++ NV F
Sbjct: 139 RALDYCKSKHGSNMIHFEASAKENTNVTDLF 169
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 72.1 bits (169), Expect = 8e-14
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Frame = +2
Query: 29 KTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDL----DGKKVK 196
++YD L K++L G SG GK+ +L RF ++ ++ T+GIDF R I + K++K
Sbjct: 4 ESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIK 63
Query: 197 LQIWDTAGQERFRTITTAY 253
LQIWDTAGQE+FR++ Y
Sbjct: 64 LQIWDTAGQEKFRSVARNY 82
Score = 67.7 bits (158), Expect = 2e-12
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 RGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERGEQ 435
RG+ G +LVYDVTN+ SFE + +W+ +I A + + ++ G+K DL +QRQVS E +
Sbjct: 84 RGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAE 143
Query: 436 LAIEYQIKFV-ETSAKDSLNVEYAF 507
E I ETS+ NVE F
Sbjct: 144 FCSEKHISSAHETSSYTGSNVEECF 168
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 71.3 bits (167), Expect = 1e-13
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLD-GKKVKLQIWDTAGQE 226
KL+L+GDS VGK+S++ RF +D F+ STIG F +T+ +D VKL+IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 227 RFRTITTAY 253
R++++ Y
Sbjct: 76 RYKSLAPMY 84
Score = 58.0 bits (134), Expect = 1e-09
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 274 MLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQ-VSKERGEQLAIEY 450
++VYD+T S E K+WI+ ++ A + + GNK DL +R+ V K E A E
Sbjct: 92 IVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAYAAEA 151
Query: 451 QIKFVETSAKDSLNVEYAFS 510
+ F ETSAK + NV F+
Sbjct: 152 NLLFFETSAKTAENVNELFT 171
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 70.1 bits (164), Expect = 3e-13
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +1
Query: 253 LRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMIL-GNKCDLDSQRQVSKERG 429
+R G +LVY++T+ SF+ I + + I D ++L NKCDL+++R VS+ G
Sbjct: 77 MRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEG 136
Query: 430 EQLAIEYQIKFVETSAKDSLNVEYAF 507
EQLA +VETSAK LNVE AF
Sbjct: 137 EQLAKSMHCLYVETSAKLRLNVEEAF 162
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/77 (31%), Positives = 43/77 (55%)
Frame = +2
Query: 23 MAKTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQ 202
M TY +KL+++GD GVGK+++ + + F + TI ++ + ++DG+ L
Sbjct: 1 MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KKCEIDGEGALLD 59
Query: 203 IWDTAGQERFRTITTAY 253
+ DTAGQE + + Y
Sbjct: 60 VLDTAGQEEYSAMREQY 76
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 58.0 bits (134), Expect = 1e-09
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 259 GSMGIMLVYDVTNEKSFENIKNWIRNIEENASAD-VEKMILGNKCDLDSQRQVSKERGEQ 435
G G +LVY +T++ SFE +K I + + V +++GNK DL QR V+ E G+
Sbjct: 77 GIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAEEGKA 136
Query: 436 LAIEYQIKFVETSAKDSLNVEYAFSL 513
LA E++ + E SA+ + NV AF L
Sbjct: 137 LANEWKCAWTEASARHNENVARAFEL 162
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/92 (23%), Positives = 49/92 (53%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 229
++ ++G VGK+S+ ++ E+ F S+ TI F + I G++ +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFS-KNIKYKGQEFATEIIDTAGQDE 66
Query: 230 FRTITTAYSVVLWELCLSTMLRMRRALKTLRI 325
+ + + +S+ + L + + + + ++I
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKI 98
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/61 (37%), Positives = 41/61 (67%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 229
KL+++GD GKT +L FS+ F ++ T+ ++ + +++DG+ V+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHVELALWDTAGQED 66
Query: 230 F 232
+
Sbjct: 67 Y 67
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 54.4 bits (125), Expect = 2e-08
Identities = 22/61 (36%), Positives = 41/61 (67%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 229
KL+++GD GKT +L FS+ F ++ T+ ++ + +++DG+ ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHIELALWDTAGQED 66
Query: 230 F 232
+
Sbjct: 67 Y 67
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 54.0 bits (124), Expect = 2e-08
Identities = 22/69 (31%), Positives = 40/69 (57%)
Frame = +2
Query: 26 AKTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQI 205
A+ + K+ +IGDS +GKTS++ + + +F+ T+G++F +TI + ++ I
Sbjct: 4 ARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSI 63
Query: 206 WDTAGQERF 232
WD GQ F
Sbjct: 64 WDLGGQREF 72
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 53.2 bits (122), Expect = 4e-08
Identities = 24/64 (37%), Positives = 40/64 (62%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 229
KL+++GD GKTS+L F+ F ++ T+ ++ + +DGK V+L +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENY-VSDCRVDGKSVQLALWDTAGQEE 68
Query: 230 FRTI 241
+ +
Sbjct: 69 YERL 72
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 52.8 bits (121), Expect = 5e-08
Identities = 23/71 (32%), Positives = 39/71 (54%)
Frame = +2
Query: 47 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 226
FKL+L+GD G GKT+ + R F +I+T+G++ + ++ +WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 227 RFRTITTAYSV 259
+ + Y +
Sbjct: 70 KLGGLRDGYYI 80
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/85 (25%), Positives = 49/85 (57%)
Frame = +1
Query: 253 LRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERGE 432
++G GI++ +DVT+ +++N+ +W R++ ++ ++ GNK D+ +R+V K +
Sbjct: 80 IQGQCGIIM-FDVTSRITYKNVPHWWRDL-VRVCENIPIVLCGNKVDV-KERKV-KAKAI 135
Query: 433 QLAIEYQIKFVETSAKDSLNVEYAF 507
+ +++ + SAK + N E F
Sbjct: 136 TFHRKKNLQYYDISAKSNYNFEKPF 160
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 229
K++++GD GKTS+L F++ F + TI ++ I I +DG ++L +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY-IHDIFVDGNSIELSLWDTAGQEE 73
Query: 230 F 232
+
Sbjct: 74 Y 74
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIR-TIDLDGKKVKLQIWDTAGQE 226
KL+++GD G GKT +L FS F ++ T+ ++ T + K ++L +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 227 RF 232
+
Sbjct: 76 EY 77
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 42.7 bits (96), Expect = 5e-05
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Frame = +2
Query: 2 GTRIVVKMAKTYDCLFKLLLIGDSGVGKTSIL-FRFSEDAFNISFISTIGIDFKIRTIDL 178
G +++ K + ++LL+G GKT+IL +ED +S T G F+IRT+++
Sbjct: 2 GLLTILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVS--PTFG--FQIRTLEV 57
Query: 179 DGKKVKLQIWDTAGQERFRTITTAY----SVVLWELCLSTMLRMRRALKTLR 322
+G ++ IWD GQ+ R Y ++W + LR+ TL+
Sbjct: 58 EG--LRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQ 107
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 229
++L++G GKT+IL++ N S ++ + F + T+ K +K +WD GQ++
Sbjct: 23 RILMLGLDAAGKTTILYKLK---LNQSVVTIPTVGFNVETVTY--KNIKFNVWDVGGQDK 77
Query: 230 FRTITTAY 253
R + Y
Sbjct: 78 IRPLWRHY 85
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/61 (29%), Positives = 37/61 (60%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 229
K +++GD VGKT +L ++ + F ++ T+ ++ + T+ + + L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 230 F 232
+
Sbjct: 64 Y 64
Score = 31.9 bits (69), Expect = 0.10
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Frame = +1
Query: 274 MLVYDVTNEKSFENIK-NWIRNIEENASADVEKMILGNKCDL------------DSQRQV 414
++ + VT+ SFEN+K W + + V +I+G + DL Q +
Sbjct: 79 LVCFSVTSPASFENVKEKWFPEVHHHCPG-VPCLIVGTQIDLRDDPSVQQKLARQHQHPL 137
Query: 415 SKERGEQLAIEY-QIKFVETSAKDSLNVEYAF 507
+ E+GE+LA E +K+VE SA ++ F
Sbjct: 138 THEQGERLARELGAVKYVECSALTQKGLKNVF 169
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 229
++L++G GKT+IL++ ++ I TIG F + T++ + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEY--RNISFTVWDVGGQDK 73
Query: 230 FRTITTAY 253
R + Y
Sbjct: 74 IRPLWRHY 81
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.96
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 62 IGDSGVGKTSILFRFSEDAFNISFISTIGIDFKI 163
IGD V ++LFRF + +F + I +GID I
Sbjct: 423 IGDMVVFSKNVLFRFIQLSFYVGMIVILGIDLFI 456
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 50 KLLLIGDSGVGKTSIL-FRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 226
K+LL+G SG GK+S+ FS + ID + + G V L +WD GQE
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQE 62
Query: 227 RF 232
F
Sbjct: 63 AF 64
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 512 FSQGLKAKMEKKQEASNPSGGRSGVHKPTLNDARKPVTWLSRCSVL*P 655
F +G+K K + + S G KP LND V+ SR +V+ P
Sbjct: 661 FLEGVKTKQRAIIKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGP 708
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 268 GIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILG 381
GI L+ + E ++ +++ I+ENA + V +++LG
Sbjct: 947 GINLITSLIKEYGKNSVLRYMKAIQENAESAVRQLLLG 984
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 232 PYNNNSILRGSMGIMLVYDVTNEKSFENIK-NWIRNIE---ENASADVE 366
PYN N L G ML +++ E++ E+ + WI + NA DVE
Sbjct: 152 PYNQNPALHEYSG-MLCFELAKEEASESERTKWIEKAKYNFSNAGIDVE 199
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 530 AKMEKKQEASNPSGGRSGVHKPT 598
A + +ASNP+G S H+PT
Sbjct: 546 ASLAHLSQASNPNGSSSAPHRPT 568
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 47 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 226
F L+L G+SG+GKT+ F F+ + S +G + K+R + K V+++I +E
Sbjct: 29 FTLMLCGESGLGKTT----FCNTLFSTTIKSHMGPE-KVRAKHAE-KTVEIEITKAELEE 82
Query: 227 R 229
+
Sbjct: 83 K 83
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 362 TSALAFSSMFLIQFLMFSKLFSFVTS*TSIIPIEPRSMLLLLYGISLDQQY 210
+SALAF SM++I + ++FV + I P S +LY + D Q+
Sbjct: 401 SSALAFLSMYVIVDMAVLLCYAFVRTIQIIRKTGPYSHPDVLYNLYSDTQH 451
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 114 SSENLNSIDVFPTPESPIRSNLNKQS 37
SSE +S+DV PTP + NL S
Sbjct: 617 SSEPTSSVDVAPTPVEDVNVNLESIS 642
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = +1
Query: 226 EIPYNNNSILRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILG 381
++ Y + S++R SM +L + + F +K+W ++ + N + + + +LG
Sbjct: 339 QLHYISASMIRLSMPYILCELADHPERFYKLKDWSKSPDFNLALESNRTLLG 390
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -3
Query: 368 FSTSALAFSSMFLIQFLMFSKLFSFVTS*TSIIPIEPRSMLLLLYGISLDQQYPIF 201
F+ L +LIQF +SF T+ T+ +E + GI D Y IF
Sbjct: 861 FTIPELGIIQKYLIQFEWLDMFYSFETTRTTDSDLERLITYGVSAGIPEDNDYMIF 916
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.4 bits (53), Expect = 8.9
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = -3
Query: 431 SPRSFDTCL*ESKSHLFPSIIFSTSALAFSSMFLIQFLMFSKLFSFVTS*TSIIPIEPRS 252
SPRS T + PSIIF + + S+F FL F+ SI P+EP
Sbjct: 750 SPRSLLTKIFSEARKNAPSIIFINNVEKWPSLFSHSFLSM-----FLLLLDSISPLEPVM 804
Query: 251 ML 246
+L
Sbjct: 805 LL 806
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,459
Number of Sequences: 5004
Number of extensions: 66835
Number of successful extensions: 282
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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