Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20004
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    26   0.38 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.50 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.67 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   1.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.7  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   4.7  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 629 RRAGMATNSRLPSPINFLASHRKGF 555
           +RAG  T S +  P+  +  HR GF
Sbjct: 183 KRAGPRTESAVYEPVRIMGVHRPGF 207


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -3

Query: 487 SFRLNFSVFNIHFV 446
           SFR+NF++FN++ V
Sbjct: 112 SFRMNFAIFNLYMV 125


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -1

Query: 348 MTDSTLSLNIVSVSKTTKLLLSGCVPHIKTNCPRFVWNTRGCTSTPRVAT 199
           +T   L L + SVSK   L LSG V   K  C  F       + T R  T
Sbjct: 372 LTRGRLVLTVSSVSKPEALRLSGSVV-TKVTCELFQATLSSSSDTNRFGT 420


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 369 LRTKMYLTGIEIWSVYVKVSLLSCAETKWILK 464
           + T  Y+TGI +W + +  + +  A  K+  K
Sbjct: 123 IHTSSYMTGIWVWLINISATYICYAFGKFSCK 154


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 369 LRTKMYLTGIEIWSVYVKVSLLSCAETKWILK 464
           + T  Y+TGI +W + +  + +  A  K+  K
Sbjct: 356 IHTSSYMTGIWVWLINISATYICYAFGKFSCK 387


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 369 LRTKMYLTGIEIWSVYVKVSLLSCAETKWILK 464
           + T  Y+TGI +W + +  + +  A  K+  K
Sbjct: 356 IHTSSYMTGIWVWLINISATYICYAFGKFSCK 387


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 402 SLCQLGTFLYVTREVTSNMTDSTL 331
           S C +  F+Y+  + TSN+T S L
Sbjct: 14  SFCCILFFIYLYWQQTSNLTTSKL 37


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 718 IFLRKSSICASEDLFNWV 665
           IF+ K S+    D+F W+
Sbjct: 102 IFILKESVDTFNDIFGWI 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,764
Number of Sequences: 336
Number of extensions: 4526
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)