Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20004
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 197 1e-51
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 62 8e-11
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 60 3e-10
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 56 6e-09
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 50 3e-07
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 49 8e-07
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 48 2e-06
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 47 3e-06
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 46 8e-06
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 44 3e-05
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 44 3e-05
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 42 1e-04
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 42 1e-04
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 40 3e-04
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 40 3e-04
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 38 0.002
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 38 0.002
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 31 0.18
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.32
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 29 0.73
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.97
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 28 1.3
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 28 1.7
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 27 2.2
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.2
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 26 5.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.0
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 9.0
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.0
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.0
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 197 bits (481), Expect = 1e-51
Identities = 93/136 (68%), Positives = 104/136 (76%)
Frame = +2
Query: 101 DMPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQ 280
++PTFK VLVGDGGTGKTTFVKRHLTGEFEKKY+ATLGVEVHPL FHTN G+
Sbjct: 6 NVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDT 65
Query: 281 PDKRSLVVLETDTIFKDNVLSVMFDVTSRVTYKNVPNWHRDLVRVCEGIPIVLCGNKVDI 460
+ L L + +MFDVTSR+TYKNVP+W RDLVRVCE IPIVLCGNKVD+
Sbjct: 66 AGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIVLCGNKVDV 125
Query: 461 KDRKVKAKTIVFHRKK 508
K+RKVKAK I FHRKK
Sbjct: 126 KERKVKAKAITFHRKK 141
Score = 130 bits (315), Expect = 2e-31
Identities = 70/135 (51%), Positives = 81/135 (60%)
Frame = +1
Query: 256 IRFNVWDTAGQEKFGGLRDGYYIQGQCAISHVRRNLSSYVQKCT*LA*RFGPCM*RYPYC 435
I FNVWDTAGQEK GGLRDGYYIQGQC I + P
Sbjct: 58 ICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIV 117
Query: 436 LVRKQSGY*RQKS*GENYCFPQEKDLQYYDISAKSNYNFEKPFLWLARKLIGDGNLEFVA 615
L + +K + F ++K+LQYYDISAKSNYNFEKPFLWLARKL+G+ NLEFVA
Sbjct: 118 LCGNKVDVKERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPNLEFVA 177
Query: 616 MPALLPPEVTMGSSM 660
PAL PPEV + +
Sbjct: 178 SPALAPPEVQVDQQL 192
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 62.1 bits (144), Expect = 8e-11
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +2
Query: 104 MPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQP 283
MPT KCV+VGDG GKT + + T +F YV T+ + + + + L
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTV-FDNYAVTVMIGDEPYTLGLFDTA 59
Query: 284 DKRSLVVLETDTIFKDNVLSVMFDVTSRVTYKNV-PNWHRDLVRVCEGIPIVLCGNKVDI 460
+ L + + +V V F VTS +++NV W ++ C G+P ++ G ++D+
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDL 119
Query: 461 KD 466
+D
Sbjct: 120 RD 121
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 60.1 bits (139), Expect = 3e-10
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +2
Query: 113 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQPDKR 292
FK +L+GD G GK+ + R + + Y++T+GV+ F L +
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
Query: 293 SLVVLETDTIFKDNVLSVMFDVTSRVTYKNVPNWHRDLVR-VCEGIPIVLCGNKVDIKDR 469
+ + + + +++DVT + ++ NV W +++ R EG+ +L GNK D+ D+
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDK 128
Query: 470 KV 475
KV
Sbjct: 129 KV 130
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 56.0 bits (129), Expect = 6e-09
Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Frame = +2
Query: 113 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGQFVLMCGTQPDK 289
FK V +G+ GKT+ + R + +F+ Y AT+G++ + ++ +R + + T +
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 290 RSLVVLETDTIFKDNVLSVMFDVTSRVTYKNVPNWHRDLVRVCEG--IPIVLCGNKVDIK 463
R ++ + I +V +++D+T+ ++ N W D VR G + IVL GNK D+
Sbjct: 72 RFRSLIPS-YIRDSSVAIIVYDITNHNSFVNTEKWIED-VRAERGDDVIIVLVGNKTDLA 129
Query: 464 DRK 472
D++
Sbjct: 130 DKR 132
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 50.4 bits (115), Expect = 3e-07
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Frame = +2
Query: 113 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL-VFHTNRGQFVLMCGTQPDK 289
FK VL+GD G GK+ + R EF + +T+GVE + N+ + T +
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
Query: 290 RSLVVLETDTIFKDNV-LSVMFDVTSRVTYKNVPNWHRDLVRVCE-GIPIVLCGNKVDI 460
R + T ++ V +++D+T + ++ NV W ++L + I I+L GNK D+
Sbjct: 71 RYRAI--TSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDL 127
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 48.8 bits (111), Expect = 8e-07
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Frame = +2
Query: 116 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGQFVLMCGTQPDKR 292
K V+VGDGG GKT + +G F ++YV T+ + + + N L +
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 293 SLVVLETDTIFKDNVLSVMFDVTSRVTYKNV-PNWHRDLVRVCEGIPIVLCGNKVDI-KD 466
L + NV+ + F + + NV W+ ++ C PIVL G K D+ KD
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRKD 135
Query: 467 R 469
R
Sbjct: 136 R 136
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Frame = +2
Query: 116 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQPDKRS 295
K +L+GD G GK+ + R F ++ T+G++ + + L +
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 296 LVVLETDTIFKDNVLSVMFDVTSRVTYKNVPNWHRDLVR-VCEGIPIVLCGNKVDIKDRK 472
+ T + +++DVT + ++ NV W ++ + E + +L GNK D +D++
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQR 130
Score = 33.5 bits (73), Expect = 0.034
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 232 SIPYEPRAIRFNVWDTAGQEKFGGLRDGYY 321
+I + + I+ +WDTAGQE+F + YY
Sbjct: 50 TIELDGKRIKLQIWDTAGQERFRTITTAYY 79
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 46.8 bits (106), Expect = 3e-06
Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Frame = +2
Query: 116 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQPDKRS 295
K +++G+ G GKT+ + +++ +F K Y AT+G + + L +
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 296 LVVLETDTIFKDNVLSVMFDVTSRVTYKNVPNWHRD-LVRVC----EGIPIVLCGNKVDI 460
L + +++DV + +++ + +W + L++ E P +L GNKVD+
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDV 129
Query: 461 KDRK---VKAKTIVF 496
+++K K+K + F
Sbjct: 130 EEQKRMVSKSKALAF 144
Score = 32.7 bits (71), Expect = 0.059
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 211 GCRSTSSSIPYEPRAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 342
G + + + + + +WDTAGQE+F L +Y C +
Sbjct: 42 GADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCV 85
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 45.6 bits (103), Expect = 8e-06
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Frame = +2
Query: 116 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG----VEVHPLVFHTNRGQFVLMCGTQP 283
K VL+GD GK++ V R + +F+ +T+G + P+ +T+ + Q
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 284 DKRSLVVLETDTIFKDNVLSVMFDVTSRVTYKNVPNWHRDLVRVC-EGIPIVLCGNKVDI 460
+SL + N V++D+T + + +W ++L R EGI I L GNK+D+
Sbjct: 76 RYKSLAPMYYRNA---NCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDL 132
Query: 461 KDRK 472
+
Sbjct: 133 AQER 136
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 211 GCRSTSSSIPY-EPRAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 342
G + ++P E +++ +WDTAGQE++ L YY CAI
Sbjct: 48 GAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAI 92
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 43.6 bits (98), Expect = 3e-05
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Frame = +2
Query: 116 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQPDKRS 295
K V+VGDG GKT+ + G F +YV T+ E + + L +
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTV-FENYVSDCRVDGKSVQLALWDTAGQEE 68
Query: 296 LVVLETDTIFKDNVLSVMFDVTSRVTYKNV-PNWHRDLVRVCEGIPIVLCGNKVDIKDRK 472
L + K +++ V F + S + +NV W ++ +C +P +L G K D++
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRSDP 128
Query: 473 V 475
V
Sbjct: 129 V 129
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Frame = +2
Query: 113 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQPDKR 292
+K V+VGDGG GK+ + + F +Y T+ G + + T +
Sbjct: 9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEE 68
Query: 293 SLVVLETDTIFKDNVLSVMFDVTSRVTYKNVPNWHRDLVRV--CEGIPIVLCGNKVDIKD 466
+ E + L +++++TSR ++ + +++ ++RV + P+VL NK D++
Sbjct: 69 YSAMREQYMRTGEGFL-LVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEA 127
Query: 467 RKVKAK 484
+V ++
Sbjct: 128 ERVVSR 133
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 41.9 bits (94), Expect = 1e-04
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Frame = +2
Query: 116 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQPDKRS 295
K V+VGDG GKT + G F + YV T+ E + + L +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV-FENYVADVEVDGRHIELALWDTAGQED 66
Query: 296 LVVLETDTIFKDNVLSVMFDVTSRVTYKNV-PNWHRDLVRVCEGIPIVLCGNKVDIKD 466
L + +V+ + F V + + NV W +++ C +PI+L G KVD+++
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRN 124
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 41.5 bits (93), Expect = 1e-04
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Frame = +2
Query: 110 TFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQPDK 289
T K ++GD GKT+ + ++ G F+++ TLGV + +
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
Query: 290 RSLVVLETDTIFKDNV-LSVMFDVTSRVTYKNVPNWHRDLVRVCEGIPIVLCGNKVD 457
R V + + D V + MFD++ + T ++ W+R + +L G K D
Sbjct: 70 REFVNM-LPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGTKYD 125
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 40.3 bits (90), Expect = 3e-04
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = +2
Query: 116 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGQFVL--MCGTQPD 286
K V++GDG GKT+ + G F + Y T+ +H + N + L G +
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 287 KRSLVVLETDTIFKDNVLSVMFDVTSRVTYKNV-PNWHRDLVRVCEGIPIVLCGNKVDIK 463
+ + +DT +V+ + F V SR + +NV W ++ C G+ +VL K D++
Sbjct: 75 DQLRSLSYSDT----HVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLR 130
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Frame = +2
Query: 116 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQPDKRS 295
K V++GD G GKT + + + +F ++Y AT+G + + L +
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 296 LVVLETDTIFKDNVLSVMFDVTSRVTYKNVPNWHRDLVRVCE----GIPIVLCGNKVDIK 463
L + ++++V + ++ +V NW ++ + P ++ GN++D K
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQID-K 128
Query: 464 DRKVKAKTI 490
D +A ++
Sbjct: 129 DASKRAVSL 137
Score = 32.7 bits (71), Expect = 0.059
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 211 GCRSTSSSIPYEPRAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 342
G + + + + + +WDTAGQE+F L +Y C +
Sbjct: 42 GADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCV 85
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 37.9 bits (84), Expect = 0.002
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Frame = +2
Query: 116 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQPDKRS 295
K V+VGDG GKT + G F + YV T+ E + + L +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV-FENYVADVEVDGRHVELALWDTAGQED 66
Query: 296 LVVLETDTIFKDNVLSVMFDVTSRVTYKNV-PNWHRDLVRVCEGIPIVLCGNKVDIKD 466
L + +V+ + F V S + NV W +++ C +PI+L K D+++
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRN 124
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 172 FDWRVREKIRCDSGCRSTSSSIPYEPRAIRFNVWDTAGQEKFGGLRDGYY 321
+D +V + D R S + + + I+ +WDTAGQEKF + YY
Sbjct: 34 WDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYY 83
Score = 36.7 bits (81), Expect = 0.004
Identities = 24/124 (19%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Frame = +2
Query: 116 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG----QFVLMCGTQP 283
K VL G GTGK+ ++R + +++ + T+G++ + G + L
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 284 DKRSLVVLETDTIFKDNVLSVMFDVTSRVTYKNVPNWHRDLVRVCEG-IPIVLCGNKVDI 460
+ + + +++DVT++ +++ + +W D+ + I +VL G+K D+
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDL 130
Query: 461 KDRK 472
++++
Sbjct: 131 QNQR 134
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 173 LTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQPDKRSLVVLETDTIFKDNVLSVM 349
LT K + L E+ + FH RG+F + C + D + + F N+ S+M
Sbjct: 155 LTTHENKSFTLKLANELEFIFFHDTRGKFSVYCSSSKDDAITFSINRNNNFLGNLWSLM 213
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 30.3 bits (65), Expect = 0.32
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Frame = +2
Query: 104 MPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQFVLMCGTQP 283
M + V+ GD G GK++ + + + + P +N +++ TQ
Sbjct: 1 MKEVRVVICGDQGVGKSSLISALIQEDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDTQS 60
Query: 284 DKRSLVVLETDTIFKDNVLSVMFDVTSRVTYKNVPNWHRDLVR-VCEGIPIVLCGNKVDI 460
D L + I K NV+ +++ + +Y+ V + R + +PIVLC NK +
Sbjct: 61 DSNEREYLAAE-IKKANVICLVY--SDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSED 117
Query: 461 KDRKVKAKTI 490
D TI
Sbjct: 118 LDNYQGLHTI 127
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 29.1 bits (62), Expect = 0.73
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 122 VLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVFHTN 247
++VG G+GKTTF+++ HL + + Y+ L V L + N
Sbjct: 12 IVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEAN 56
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.7 bits (61), Expect = 0.97
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +2
Query: 356 VTSRVTYKNVPNWHRDLVRVCEGIPIVLCGNKVDIKDRKVKAKTIVFHRKKIC 514
++ +Y+ VPN H++ + C + N++ I D++ K K ++C
Sbjct: 28 ISKSCSYQKVPNSHKEFTKFCYEV-----YNEIKISDKEFKEKRAALDTLRLC 75
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 256 IRFNVWDTAGQEKFGGLRDGYY 321
I+FNVWD GQ+K L Y+
Sbjct: 65 IKFNVWDVGGQDKIRPLWRHYF 86
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 122 VLVGDGGTGKTTFVK 166
VL+G+ GTGKTTF K
Sbjct: 379 VLLGENGTGKTTFCK 393
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 244 EPRAIRFNVWDTAGQEKFGGLRDGYYIQGQCAISHVRRN 360
E R I F VWD GQ+K L Y+ Q I V N
Sbjct: 57 EYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSN 95
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = -1
Query: 294 LLLSGCVPHIKTNCPRFVWNTRGCTSTPRVATYFFSNSPVKCLLTKVVLPVPPSPTNTHL 115
LLLS + I N PR WN S P T + PV LL +++ +
Sbjct: 538 LLLSKVLGRIFDNTPRKKWNRWNQLSAPSWGTVY----PVYSLLVTIMICY---SIIAPI 590
Query: 114 NVGISSAIFVVLWLFYS 64
+G ++ FV+++ YS
Sbjct: 591 IIGFAAVAFVLIYFAYS 607
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -1
Query: 378 LYVTREVTSNMTDSTLSLNIVSVSKTTKLLLSGC-----VPHIKTNCPRFVWNTR 229
LY+ +V NM D L IVS++ T +L + +P+ +C + +WN R
Sbjct: 839 LYLYYDVVKNMIDYRKDL-IVSMTLTFYILYNSIMSKAPIPYFVPSCRQALWNLR 892
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 119 CVLVGDGGTGKTTFVK 166
C+LVGD TGKT ++
Sbjct: 1872 CILVGDTATGKTCILR 1887
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 626 FCHQKLQWDPQWQNPIEKIF 685
F H+K+ D QWQN IE IF
Sbjct: 149 FIHKKVTNDSQWQN-IEVIF 167
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 516 LQIFFLWKTIVFALTFLSLISTLFPHKTIGIPS 418
L F LW V+ ++ +SL ++ FPH + + S
Sbjct: 8 LTSFNLWSHGVYKISSISLSNSFFPHSFMFVKS 40
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 9.0
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = -1
Query: 471 FLSLISTLFPHKTIGIPSHTRTKSLCQLGTFLYVTREVTS--NMT-DSTLSLNIVSVSKT 301
FLS++ + H + PS+T +SL + +F Y R V S N T +S L I+S+ +
Sbjct: 269 FLSILCVGYYHHLLNNPSNTELQSLIKKYSF-YSERLVKSADNFTIESIQCLLILSIYRY 327
Query: 300 TKLLLSGCVPHIK--TNC 253
+ +S ++K NC
Sbjct: 328 CRTEISAAWYYMKLGLNC 345
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 650 PIVTSGGRRAGMATNSRLPSPINFLASHRKGFSKL 546
P++ S G G +N R+PS + F+A K SKL
Sbjct: 1401 PLLPSFGIAKGSYSNVRIPSMLRFIADSGK-LSKL 1434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,235
Number of Sequences: 5004
Number of extensions: 77598
Number of successful extensions: 325
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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