Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20004
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    27   0.19 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.77 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.5  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = +1

Query: 205 DSGCRSTSSSIPYEPRAIRFNVWDTAGQEKFGGLRDGYYIQGQCAISHVRRNL 363
           DS  R TSS+  Y+PR  ++ + D    E F  L+DG  I G  A+SH  +NL
Sbjct: 218 DSFQRLTSSTFVYDPRYTKYTIND----ESF-SLQDG--ILGM-ALSHKTQNL 262


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 8/50 (16%), Positives = 27/50 (54%)
 Frame = +2

Query: 314 DTIFKDNVLSVMFDVTSRVTYKNVPNWHRDLVRVCEGIPIVLCGNKVDIK 463
           + + K ++L ++     +   K++ +W  ++  + +G P++   N +D++
Sbjct: 358 EKVIKHDILRMLIIDLRKKQLKSLEDWENEMNIITKGKPLIRVENIIDLE 407


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 386 PNWHRDLVRVCEGIPIVLCGNKVDIKDRKVKAKTIVFHRKKIC 514
           PNW  + V+ C+G+  V    +VD   R     T +   K+IC
Sbjct: 107 PNWSYNDVKYCDGLTSVY-RMQVDKCGRLWILDTGILGEKQIC 148


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 148 QNNLCQKTFDWRVREKIR-CDSGCRSTSSSIPYEPRAIRFNVWDTAG 285
           + +L Q     RV E++     G  +T SS+P  PR++  +   ++G
Sbjct: 26  KRHLAQDKVKVRVAEEVDPLPFGVENTISSVPQPPRSLEGSYDSSSG 72


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -1

Query: 162 TKVVLPVPPSPTNTHLNVGISSAIFVVLWL 73
           TK   P   S     + VG+   +F++ W+
Sbjct: 257 TKPTSPYHVSDHKAAITVGVIMGVFLICWV 286


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 104 YHLPFSLFYGYFIR 63
           Y+LP+S  YG F R
Sbjct: 598 YNLPYSSLYGRFKR 611


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,406
Number of Sequences: 438
Number of extensions: 5247
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)