Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20002
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    24   1.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.9  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = -3

Query: 691 MIESRD*FGVVLDWPFYLFNKQRPQN*KRSRLIILINKKNTITDIMPETKLSCKIVS*VN 512
           + E+R    VV DW    F +   +  K+   +   NK   +T ++P       +V+ + 
Sbjct: 149 LYEARKLANVVTDW--VNFERIYYKLTKKKLSVFFGNKPVILTVVLPLLACGVMVVTHIT 206

Query: 511 DRKKKRLKIVIFCY 470
               K +++V +CY
Sbjct: 207 MAHFKIIQVVPYCY 220


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 232  EDIVLRRDESVTLKAKSLGGTECFFLTVD 318
            EDI   RD++  +K K  GG   + + +D
Sbjct: 942  EDIKSVRDKAEYIKTKGFGGAVAWTIDLD 970



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 373  LILGTKPLSPCTVYSTVMSLPSGRSTRYP 287
            ++   KP    T  ST  S   G +T YP
Sbjct: 1339 IVTTAKPAQSTTSVSTTTSWNPGSTTNYP 1367



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 166  RATRRTVSPYA-VRIQIRR*RS*EDIVLRRDESVTLKAKSLGGTECFFLTVD 318
            R  R  + PYA +R Q     S +DI + R +S  +KA  LGG   + L +D
Sbjct: 2120 RDRRGRIGPYAYLRDQWV---SFDDIGMIRHKSEFIKAMGLGGGMIWALDLD 2168


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 159 QHPRYKKNSIPLCRTNTNTTLKIL 230
           QH  Y  N++ +   N+  T KIL
Sbjct: 388 QHQGYPTNTVTILGPNSGNTPKIL 411


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,026
Number of Sequences: 336
Number of extensions: 3359
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)