Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20002
         (732 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK125488-1|BAC86180.1|  181|Homo sapiens protein ( Homo sapiens ...    34   0.46 
BC112317-1|AAI12318.1| 1284|Homo sapiens zinc finger protein 423...    31   5.6  
BC112315-1|AAI12316.1| 1284|Homo sapiens zinc finger protein 423...    31   5.6  
AF221712-1|AAF28354.1| 1224|Homo sapiens Smad- and Olf-interacti...    31   5.6  
AB018303-1|BAA34480.2| 1224|Homo sapiens KIAA0760 protein protein.     31   5.6  

>AK125488-1|BAC86180.1|  181|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43499 fis, clone PEBLM2002749. ).
          Length = 181

 Score = 34.3 bits (75), Expect = 0.46
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 364 GTKPLSPCTVYSTVMSLPSGRSTRYPPT-TLPSASPIR 254
           GT+P  P   YSTV  +PS      PPT T PS+ P R
Sbjct: 19  GTRPKKPPCAYSTVHRVPSAPEGPCPPTSTAPSSGPPR 56


>BC112317-1|AAI12318.1| 1284|Homo sapiens zinc finger protein 423
           protein.
          Length = 1284

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 362 YKATVALYCVLDRHESTVRKKHSVPPNDFAFSVTDSSRRSTMSSQDLQR 216
           + +   +YC LD H       HSV P+    SV   S  +  SS  ++R
Sbjct: 332 FSSVEGVYCHLDSHRQPDSSNHSVSPDPVLGSVASMSSATPDSSASVER 380


>BC112315-1|AAI12316.1| 1284|Homo sapiens zinc finger protein 423
           protein.
          Length = 1284

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 362 YKATVALYCVLDRHESTVRKKHSVPPNDFAFSVTDSSRRSTMSSQDLQR 216
           + +   +YC LD H       HSV P+    SV   S  +  SS  ++R
Sbjct: 332 FSSVEGVYCHLDSHRQPDSSNHSVSPDPVLGSVASMSSATPDSSASVER 380


>AF221712-1|AAF28354.1| 1224|Homo sapiens Smad- and Olf-interacting
           zinc finger protein protein.
          Length = 1224

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 362 YKATVALYCVLDRHESTVRKKHSVPPNDFAFSVTDSSRRSTMSSQDLQR 216
           + +   +YC LD H       HSV P+    SV   S  +  SS  ++R
Sbjct: 272 FSSVEGVYCHLDSHRQPDSSNHSVSPDPVLGSVASMSSATPDSSASVER 320


>AB018303-1|BAA34480.2| 1224|Homo sapiens KIAA0760 protein protein.
          Length = 1224

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 362 YKATVALYCVLDRHESTVRKKHSVPPNDFAFSVTDSSRRSTMSSQDLQR 216
           + +   +YC LD H       HSV P+    SV   S  +  SS  ++R
Sbjct: 272 FSSVEGVYCHLDSHRQPDSSNHSVSPDPVLGSVASMSSATPDSSASVER 320


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,440,379
Number of Sequences: 237096
Number of extensions: 1772231
Number of successful extensions: 7789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7789
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)