Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20002
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 352 VALYPKSVSIVTLTPSVKESKVSAR 426
           VALYP SV ++ L   V     S R
Sbjct: 220 VALYPSSVQVIALGVGVSNFLSSTR 244


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 340 YKATVALYPKSVSIVTLTPSVKESKVSAR 426
           Y A   LY  SVS+V+L  S++ + +SAR
Sbjct: 297 YMAFSKLY--SVSVVSLDKSLEVNHISAR 323


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 300 LLPDGRLMTVEYTVQGDSG 356
           +LPDG L+      +GD+G
Sbjct: 567 VLPDGTLVITSVQKKGDAG 585


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 300 LLPDGRLMTVEYTVQGDSG 356
           +LPDG L+      +GD+G
Sbjct: 567 VLPDGTLVITSVQKKGDAG 585


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,290
Number of Sequences: 438
Number of extensions: 3901
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)