Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20001
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 178 6e-46
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 176 2e-45
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 161 1e-40
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 122 4e-29
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 102 5e-23
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 70 4e-13
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 40 5e-04
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 31 0.23
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.92
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 27 2.8
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 3.7
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 4.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.5
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 8.6
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 178 bits (434), Expect = 6e-46
Identities = 110/206 (53%), Positives = 124/206 (60%), Gaps = 12/206 (5%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTPTT 266
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM P
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 267 -----------QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*HIRVKTKPF 413
++ P V SD+ K K G L V + +TK F
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDM--KHWPFKVISKDGKPVLQV---------EYKGETKTF 112
Query: 414 SPRKSVPWCXXXXXXXXXXIL-ANCAECSYHGSAYFNDSQRQATKDAGTISGLNVLRIIN 590
+P + L + AYFNDSQRQATKDAG I+GLNVLRIIN
Sbjct: 113 TPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIIN 172
Query: 591 EPTAAAIAYGLDKKGTGERNVLIFDL 668
EPTAAAIAYGLD+ GE NVLIFDL
Sbjct: 173 EPTAAAIAYGLDRSNQGESNVLIFDL 198
Score = 146 bits (353), Expect = 4e-36
Identities = 86/167 (51%), Positives = 105/167 (62%), Gaps = 3/167 (1%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 433
+P+NTIFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SS
Sbjct: 60 NPHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISS 119
Query: 434 MVLTKMKETAEAYL-GKLCRMQLSRFRVLQ*LSKTSHKRCRYHLWLE--RSPNHQ*TDCC 604
MVL KM+ETAEAYL GK+ ++ + + K L R N
Sbjct: 120 MVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAI 179
Query: 605 CDCLRS*QKGYWRTKCTYL*PRGGTFDVSILTIEDGIFEVKSTAGDT 745
L +G L GGTFDVS+LTIE+GIFEVK+TAGDT
Sbjct: 180 AYGLDRSNQGESNVLIFDL--GGGTFDVSLLTIEEGIFEVKATAGDT 224
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 176 bits (429), Expect = 2e-45
Identities = 104/199 (52%), Positives = 124/199 (62%), Gaps = 5/199 (2%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTPTT 266
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM P
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-- 61
Query: 267 QYSMPNVSSDVSSKMLLCKPT*STGLSR--LSVMEANLRSR*HIRVK--TKPFSPRKSVP 434
++ + + + P + + V+E + + + K TK F+P +
Sbjct: 62 HNTIFDAKRLIGRR--FNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISS 119
Query: 435 WCXXXXXXXXXXIL-ANCAECSYHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAI 611
L + AYFNDSQRQATKDAG I+GLNVLRIINEPTAAAI
Sbjct: 120 MVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAI 179
Query: 612 AYGLDKKGTGERNVLIFDL 668
AYGLD+ E NVLIFDL
Sbjct: 180 AYGLDRSNQHETNVLIFDL 198
Score = 138 bits (335), Expect = 6e-34
Identities = 78/165 (47%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 433
+P+NTIFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SS
Sbjct: 60 NPHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISS 119
Query: 434 MVLTKMKETAEAYL-GKLCRMQLSRFRVLQ*LSKTSHKRCRYHLWLERSPNHQ*TDCCCD 610
MVL KM+E+AEA+L GK+ ++ + + K L
Sbjct: 120 MVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAI 179
Query: 611 CLRS*QKGYWRTKCTYL*PRGGTFDVSILTIEDGIFEVKSTAGDT 745
+ T GGTFDVS+LTIE+GIFEVK+TAGDT
Sbjct: 180 AYGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDT 224
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 161 bits (390), Expect = 1e-40
Identities = 91/195 (46%), Positives = 119/195 (61%), Gaps = 2/195 (1%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTP-TT 266
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ P T
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 267 QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*HIRVKTKPFSPRKSVPWCXX 446
+ + + + + K S ++ L ++ K K F+P +
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPL-VEVNVGGKKKKFTPEEISAMILS 156
Query: 447 XXXXXXXXILAN-CAECSYHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 623
L AYFND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGL
Sbjct: 157 KMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGL 216
Query: 624 DKKGTGERNVLIFDL 668
DK T E++++++DL
Sbjct: 217 DKTDT-EKHIVVYDL 230
Score = 99.5 bits (237), Expect = 4e-22
Identities = 43/76 (56%), Positives = 60/76 (78%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 433
+P NTIFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+
Sbjct: 93 NPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISA 152
Query: 434 MVLTKMKETAEAYLGK 481
M+L+KMK+TAEAYLGK
Sbjct: 153 MILSKMKQTAEAYLGK 168
Score = 43.2 bits (97), Expect = 4e-05
Identities = 17/25 (68%), Positives = 24/25 (96%)
Frame = +2
Query: 671 GGTFDVSILTIEDGIFEVKSTAGDT 745
GGTFDVS+L+I++G+FEV +T+GDT
Sbjct: 232 GGTFDVSLLSIDNGVFEVLATSGDT 256
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 122 bits (295), Expect = 4e-29
Identities = 81/205 (39%), Positives = 111/205 (54%), Gaps = 8/205 (3%)
Frame = +3
Query: 78 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 254
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 255 TPTTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEANLRSR*H------IRVKTKPFS 416
P + ++K L+ + + R + E + H + + K +S
Sbjct: 109 NPENTF--------FATKRLIGRRFKEPEVQR-DIKEVPYKIVEHSNGDAWLEARGKTYS 159
Query: 417 PRKSVPWCXXXXXXXXXXILA-NCAECSYHGSAYFNDSQRQATKDAGTISGLNVLRIINE 593
P + + L + AYFNDSQRQATK AG I+GLNVLR++NE
Sbjct: 160 PSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNE 219
Query: 594 PTAAAIAYGLDKKGTGERNVLIFDL 668
PTAAA+AYGLDKK + V +FDL
Sbjct: 220 PTAAALAYGLDKK--NDAIVAVFDL 242
Score = 65.3 bits (152), Expect = 9e-12
Identities = 30/76 (39%), Positives = 45/76 (59%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 433
+P NT F KRLIGR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNG---DAWLEARGKTYSPSQIGG 165
Query: 434 MVLTKMKETAEAYLGK 481
+L+KM+ETA YLGK
Sbjct: 166 FILSKMRETASTYLGK 181
Score = 42.7 bits (96), Expect = 5e-05
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +2
Query: 671 GGTFDVSILTIEDGIFEVKSTAGDT 745
GGTFD+SIL + +G+FEV+ST GDT
Sbjct: 244 GGTFDISILELNNGVFEVRSTNGDT 268
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 102 bits (245), Expect = 5e-23
Identities = 45/76 (59%), Positives = 58/76 (76%)
Frame = +2
Query: 254 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 433
+P NT+FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+
Sbjct: 64 NPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISA 123
Query: 434 MVLTKMKETAEAYLGK 481
MVLTKMKE +EA L K
Sbjct: 124 MVLTKMKEISEAKLNK 139
Score = 97.9 bits (233), Expect = 1e-21
Identities = 44/58 (75%), Positives = 50/58 (86%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTP 260
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AM P
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNP 65
Score = 89.0 bits (211), Expect = 6e-19
Identities = 43/53 (81%), Positives = 46/53 (86%)
Frame = +3
Query: 510 AYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDL 668
AYF+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVLIFDL
Sbjct: 150 AYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDL 202
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +2
Query: 671 GGTFDVSILTIEDGIFEVKSTAGDT 745
GGTFDVS+L I+ G+FEV +TAGDT
Sbjct: 204 GGTFDVSLLKIQGGVFEVLATAGDT 228
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 69.7 bits (163), Expect = 4e-13
Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 12/197 (6%)
Frame = +3
Query: 75 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 254
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 255 T-----------PTTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVMEANLRSR-*HIRV 398
Y P + D+ S + K T G V N + +I++
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEI-KDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQL 121
Query: 399 KTKPFSPRKSVPWCXXXXXXXXXXILANCAECSYHGSAYFNDSQRQATKDAGTISGLNVL 578
F+ K++ ++ + ++ A+F D QR+A +A I+GLN L
Sbjct: 122 IAAYFTKIKAI---------AEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPL 172
Query: 579 RIINEPTAAAIAYGLDK 629
R++N+ AAA+ YG+ K
Sbjct: 173 RLMNDNAAAALTYGITK 189
Score = 32.7 bits (71), Expect = 0.057
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 263 NTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMV 439
NT+ KRL GR ++D ++ + ++ G KV Y E+ F ++ +
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAY 125
Query: 440 LTKMKETAEAYL 475
TK+K AEA L
Sbjct: 126 FTKIKAIAEAEL 137
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 248
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQL 79
Score = 38.7 bits (86), Expect = 9e-04
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +3
Query: 492 CSYHGSAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLA 671
C YF D+QR+A + A +GL VL++I++P A +A ++ ++ V++ +
Sbjct: 166 CVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVILALMYSEEVLIDKTVVVANFG 225
Query: 672 AVPS 683
A S
Sbjct: 226 ATRS 229
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 30.7 bits (66), Expect = 0.23
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTPTT 266
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA- 83
Query: 267 QYSMPNV 287
+S+ NV
Sbjct: 84 -HSIRNV 89
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.92
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 82 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 177
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 168 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARLLV 4
G W SP S + H ++++ +F +RVL C+ L K +K+A L V
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALLAV 325
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 703 DGKDGHVEGTAARSKISTFRSPVPFLSR 620
D DGH+ T A + TF P P LS+
Sbjct: 28 DSFDGHLSITEATYDVDTFLKPSPALSK 55
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 186 PSYVAFTDTERLIGDAAKNQVAMTPTTQYSMPNVSSDVSSKMLLC 320
P +A T ER++ AAK A+ T Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.5
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = -2
Query: 456 SFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMRRLA 277
S + S+ +TSS S+P+ ++ +L +T+S G + T +SS L +
Sbjct: 903 STVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTGLNTSTPIT-SSSVLNSSTPIT 961
Query: 276 SNIVLLGSSP 247
S+ VL S+P
Sbjct: 962 SSTVLNSSTP 971
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 357 LTTSKGQCFMSACTVASSNLRPMRRLASNIVLLGSSPPGSWRHL 226
L S+ + ++S V +RP + + +IV+ GS++H+
Sbjct: 1173 LNASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHI 1216
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 198 AFTDTERLIGDAAKNQVAMTPTTQYSMPNVSSDV 299
AF D + G AK A P+T+ + N+S V
Sbjct: 155 AFYDASQTFGSTAKVAPAPAPSTKTPLANISKPV 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,741
Number of Sequences: 5004
Number of extensions: 71365
Number of successful extensions: 245
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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