Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS01000
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   3.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.0  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   7.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.2  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 41  LKH*KIMKNYKTTHIF 88
           LKH  I K+YK T IF
Sbjct: 118 LKHMLIWKSYKRTQIF 133


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 512  NDKVPASSKVHSDSPLLKAFSNSELYAHHISTNHF 408
            ND V  S  +   +     F +   Y HH+S  HF
Sbjct: 1044 NDAVMTSDSIMKCAFCDTPFISKGAYRHHLSKMHF 1078


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 569 GAKGYPTVTCQRNSRYKNQY*SKCQLK*KMKLK 667
           G KG+   +  +N+ Y+ +Y + C++   M+ K
Sbjct: 207 GCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRK 239


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -1

Query: 91  LKYVCSFVVFHNFLMFQINFGWIWTNIIV 5
           L + C+F++F   L+F +   + +  +I+
Sbjct: 266 LLFCCAFIIFTMHLLFLLCIYYFYCALII 294


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 234 HDRRIVLLDVDIFASKQHNHIPYYVR 157
           H  RIV +  +IF     NH   Y R
Sbjct: 11  HSVRIVFVQSEIFCLVNFNHRESYFR 36


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 175 YSILCEKINTACLSTHKLSHTYLPISKLLKYVCSFVVFHNFLMFQI 38
           Y I+ EK+  A  + H    +  P+ K  + V    VF  FL+  I
Sbjct: 561 YPIIQEKLGVALTNWHPSDKSAKPMLKPWQRVLPDGVFVAFLLKHI 606


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,329
Number of Sequences: 336
Number of extensions: 3901
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)