Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS01000
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    37   0.002
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    35   0.009
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    35   0.012
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    34   0.016
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    34   0.022
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    31   0.15 
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    31   0.15 
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    30   0.27 
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    30   0.27 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    30   0.35 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    30   0.35 
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    30   0.35 
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    28   1.4  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.5  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    26   4.3  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   4.3  
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...    26   4.3  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   7.6  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   10.0 
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   10.0 
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   10.0 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   10.0 
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   10.0 

>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
           +++CA+C      P +L C HVFC  C+
Sbjct: 357 DFECAICSNVAYKPVRLGCSHVFCLHCL 384


>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVRV 260
           C +C +K ++P  LS G VFC+ C++V
Sbjct: 257 CKICGEKIKNPAVLSTGFVFCYPCIQV 283


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
           +Y C +CL   ++ +   CGH+FC  C+
Sbjct: 203 DYKCVICLDSPENLSCTPCGHIFCNFCI 230


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 177 DCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQCAAQK 302
           +C +C +  Q P    CGH +C+ C+   L ++++     QK
Sbjct: 84  ECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQK 125


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
           C++C++    P    CGH+FC+ C+
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCI 280


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVR 257
           C +C +  + P   SC H FC  C+R
Sbjct: 29  CLICHEYFRAPLITSCSHTFCSFCIR 54


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQCAAQKF 305
           E +C +C      P    CGH FC  C+   L   ++ QC   +F
Sbjct: 166 ELECQICFGMLYDPVVSPCGHTFCGPCLMQAL--TQSPQCPTCRF 208


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
 Frame = +3

Query: 180 CAVCLQKCQH------PTKLSCGHVFCFLCVRV*LIKAENVQC 290
           C +C+Q+         P    CGH +C+ C+   L    NV C
Sbjct: 192 CMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSC 234


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 180 CAVCLQKCQHPTKLS-CGHVFCFLCV 254
           C  CL++     ++S CGHV+CF C+
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCL 239


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +3

Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKA---ENVQC 290
           C +C +  Q   +  C H FC LCV   +  A   ENV C
Sbjct: 711 CKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNC 750


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 165 NMEYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAEN-VQCAA 296
           ++ + C +C +  + P   +CGH FC  C      K    +QC A
Sbjct: 249 DIPFVCLICKKDYRSPIATTCGHHFCEQCAITRYRKTPTCIQCGA 293


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 171 EYDCAVCLQKCQHPT-KLSCGHVFCFLCV 254
           +++C+VCL  C  P   + CGH  C  C+
Sbjct: 603 DFNCSVCLDPCLAPVFIIPCGHFTCQECM 631


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 533 SHCLEVNNDKVPASSKVHSDSPLLKAFSNSELYAHHI 423
           S  L  N D V    +   D P++ A  N+++Y H+I
Sbjct: 147 SEILASNEDLVNKMIEAFPDVPIVSAIGNNDIYPHNI 183


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 159 SHNMEYDCAVCLQKCQHPTKLS-CGH-VFCFLCV 254
           S  +  DC +CLQK     +LS CGH  F + C+
Sbjct: 14  SRYLRRDCVICLQKDGLRAQLSPCGHDQFDYSCI 47


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 575 LHPPPASMITSTELSHCLEVNNDKVPASSKVHSDSPLL 462
           +H PP   + S  L    EVN+ K+P +S+ ++  PL+
Sbjct: 286 IHSPPFRQLPSDYL----EVNDGKIPKASEPYTSIPLV 319


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +2

Query: 269 QSRKCAMCRTEIPLDYFEN---PVLLDK 343
           QSR C +CR+++P D   N   P+L +K
Sbjct: 46  QSRACPLCRSKLPKDSRGNVLEPILSEK 73


>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 6/23 (26%), Positives = 17/23 (73%)
 Frame = -2

Query: 234 HDRRIVLLDVDIFASKQHNHIPY 166
           H+  +++ D+D+F+  +H+ +P+
Sbjct: 110 HEEMVIVRDIDVFSLCEHHLVPF 132


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 180 CAVC-LQKCQHPTKLSCGHVFCFLCVR 257
           C+VC  ++ +      CGH FC+ C++
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQ 653


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = +3

Query: 180 CAVCLQK---CQHPTKLSCGHVFCFLCV 254
           C+  ++K   C H T   C + FC++C+
Sbjct: 294 CSTTIEKNGGCNHMTCKKCKYEFCWVCL 321


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 225 CGHVFCFLCVRV*LIKAENVQCAAQ 299
           CGH+FC  C +   ++ + V C  Q
Sbjct: 167 CGHLFCSTCAKE--LRKKTVPCPVQ 189


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +3

Query: 138 KHAVLIFSHNMEYDCAVCLQK-----CQHPTKLSCGHVFCFLCVR 257
           K+A L+     ++ C VC  +     C   T+  CGHV C  C+R
Sbjct: 160 KNAKLLEFQIRKFQCNVCFDEFNGTDCFQLTR--CGHVSCQSCLR 202


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 180  CAVCLQKCQHPTKLSCGHVFCFLCV 254
            C +C    +     +CGH++C  C+
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCL 1116


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 210 PTKLSCGHVFCFLCVR 257
           P +L CGH+  F C+R
Sbjct: 323 PKRLPCGHILHFHCLR 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,501
Number of Sequences: 5004
Number of extensions: 62326
Number of successful extensions: 164
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)