Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS01000
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19) 69 5e-12
SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 35 0.052
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10) 35 0.052
SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12) 35 0.052
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21) 33 0.16
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21) 33 0.21
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_5526| Best HMM Match : zf-C3HC4 (HMM E-Value=2) 32 0.37
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 32 0.49
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.49
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 32 0.49
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 32 0.49
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 32 0.49
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 32 0.49
SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17) 31 0.85
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 31 0.85
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08) 31 0.85
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 31 0.85
SB_11151| Best HMM Match : Neur_chan_memb (HMM E-Value=3.6e-10) 31 0.85
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 31 1.1
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 31 1.1
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14) 31 1.1
SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20) 31 1.1
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_18762| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_46701| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17) 30 2.0
SB_21628| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17) 30 2.0
SB_6628| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 30 2.0
SB_51226| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 30 2.0
SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 30 2.0
SB_43880| Best HMM Match : zf-B_box (HMM E-Value=5.1e-15) 30 2.0
SB_6802| Best HMM Match : zf-B_box (HMM E-Value=5e-18) 30 2.0
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 29 2.6
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_28248| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 29 2.6
SB_26592| Best HMM Match : zf-B_box (HMM E-Value=1.3e-18) 29 2.6
SB_53640| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 29 2.6
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_48027| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10) 29 2.6
SB_41431| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28) 29 2.6
SB_22421| Best HMM Match : zf-B_box (HMM E-Value=4e-17) 29 2.6
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45) 29 3.4
SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 29 3.4
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_57762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06) 29 4.5
SB_37786| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 29 4.5
SB_18515| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15) 29 4.5
SB_50665| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_38368| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-15) 29 4.5
SB_23299| Best HMM Match : zf-C3HC4 (HMM E-Value=5.9e-06) 29 4.5
SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0) 28 6.0
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 28 6.0
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 28 6.0
SB_58031| Best HMM Match : DB (HMM E-Value=1.5) 28 7.9
SB_16508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_10749| Best HMM Match : DB (HMM E-Value=1.5) 28 7.9
>SB_4835| Best HMM Match : WWE (HMM E-Value=3.7e-19)
Length = 320
Score = 68.5 bits (160), Expect = 5e-12
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Frame = +2
Query: 236 FLFSLCEGVAHQSRKCAMCRTEIPLDYFENPVLL-----DKSNLQYAANVDGVEGFQWYY 400
F F +GVA +SRKCA+CR I DY + P L+ S+ A + + + W+Y
Sbjct: 90 FCFLCIKGVALRSRKCAICRQPISPDYLDKPTLVKVVSGQSSSSDKAPSDPPADEYVWFY 149
Query: 401 EGRNGWWKYDERTT 442
EGRNGWW+YD +T+
Sbjct: 150 EGRNGWWQYDTKTS 163
Score = 52.4 bits (120), Expect = 3e-07
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +3
Query: 153 IFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCVR 257
IF + + DC VCLQ+ +P +L CGH+FCFLC++
Sbjct: 62 IFELDYQPDCPVCLQQASYPVRLPCGHMFCFLCIK 96
>SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 35.1 bits (77), Expect = 0.052
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E +C +CL++ + P L C H FC+ C+
Sbjct: 13 EVECPICLERFKDPRVLPCLHTFCYECL 40
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 35.1 bits (77), Expect = 0.052
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E++C +C + +P CGHVFC C+
Sbjct: 376 EFECTLCCRLFYNPVTTPCGHVFCRACL 403
>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
Length = 337
Score = 35.1 bits (77), Expect = 0.052
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQC 290
++ C +CLQ P L C H FC +C ++ N+QC
Sbjct: 34 DFTCPICLQLLVEPVVLPCEHEFCKMCFTQ-NVQEANLQC 72
>SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12)
Length = 203
Score = 35.1 bits (77), Expect = 0.052
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E +C +CL++ + P L C H FC+ C+
Sbjct: 13 EVECPICLERFKDPRVLPCLHTFCYECL 40
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 159 SHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
S N ++C +CL + CGH+FC+ C+
Sbjct: 56 SANANFECNICLDTARDAVISMCGHLFCWPCL 87
>SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21)
Length = 645
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E C+VCL++ + P L C H FC C+
Sbjct: 19 ELTCSVCLEQFREPKMLPCFHTFCKECL 46
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 33.5 bits (73), Expect = 0.16
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++ C +C + P +CGHVFC C+
Sbjct: 54 DFKCGICFGVLEDPLVTTCGHVFCSQCL 81
>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
Length = 380
Score = 33.1 bits (72), Expect = 0.21
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 132 VLKHAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++ + + S + +C +CL P+ C HVFC C+
Sbjct: 49 LINQLLQVLSSGVSEECPICLDPLDDPSITRCAHVFCTGCL 89
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVR 257
C VCL + ++P L C H FC CV+
Sbjct: 20 CPVCLGEYKNPMLLRCYHSFCLRCVQ 45
>SB_5526| Best HMM Match : zf-C3HC4 (HMM E-Value=2)
Length = 106
Score = 32.3 bits (70), Expect = 0.37
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCVR 257
+ C++C + P + +C HVFC+ C++
Sbjct: 79 HQCSICSEPPTAPHQGACEHVFCYYCIK 106
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 31.9 bits (69), Expect = 0.49
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
CA+C + P C H FC LC+
Sbjct: 160 CAICKEVLTQPIATPCDHYFCVLCI 184
>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1257
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLS-CGHVFCFLCV 254
C +C + +PT LS CG+VFC+ C+
Sbjct: 1201 CPLCAKVRTNPTALSTCGYVFCYPCI 1226
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 31.9 bits (69), Expect = 0.49
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
CA+C + P C H FC LC+
Sbjct: 34 CAICKEVLTQPIATPCDHYFCVLCI 58
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 31.9 bits (69), Expect = 0.49
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 177 DCAVCLQKCQHPTKLS-CGHVFCFLCV 254
+C +CL+ +P L CGH FC C+
Sbjct: 677 ECPICLETITYPETLQGCGHTFCRPCI 703
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAEN---VQCAAQ 299
E+ C VC + T L+C H FC C++ L K +CA Q
Sbjct: 368 EFSCIVCQELFIRATTLTCSHSFCEYCLQSWLRKRNTCPICRCAVQ 413
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 31.9 bits (69), Expect = 0.49
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 177 DCAVCLQKCQHPTKLS-CGHVFCFLCV 254
+C +CL+ +P L CGH FC C+
Sbjct: 752 ECPICLETITYPETLQGCGHTFCRPCI 778
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 31.9 bits (69), Expect = 0.49
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
CA+C + P C H FC LC+
Sbjct: 160 CAICKEVLTQPIATPCDHYFCVLCI 184
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 31.9 bits (69), Expect = 0.49
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
CA+C + P C H FC LC+
Sbjct: 160 CAICKEVLTQPIATPCDHYFCVLCI 184
>SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17)
Length = 455
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSICIEHFNDPRVLPCFHSFCLHCLEELAVHSE 47
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 31.1 bits (67), Expect = 0.85
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C++CL++ Q P L+C H +C C+
Sbjct: 17 CSLCLEQYQDPRVLACLHTYCRHCL 41
>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLC 251
E+ C+ C + HP CGHV C C
Sbjct: 15 EFLCSYCRKVYLHPLVTGCGHVLCTKC 41
>SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)
Length = 599
Score = 31.1 bits (67), Expect = 0.85
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C++CL++ Q P L+C H +C C+
Sbjct: 26 CSLCLEQYQDPRVLACLHTYCRHCL 50
>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 462
Score = 31.1 bits (67), Expect = 0.85
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C++CL++ Q P L+C H +C C+
Sbjct: 17 CSLCLEQYQDPRVLACLHTYCRHCL 41
>SB_11151| Best HMM Match : Neur_chan_memb (HMM E-Value=3.6e-10)
Length = 434
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 237 KHDRRIVLLDVDIFASKQHNHIPYYVR 157
KH +RI+++D+DIFA K H Y++
Sbjct: 20 KHIKRIIVVDLDIFADKSPLHSSQYMK 46
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C +CL++ Q P L+C H +C C+
Sbjct: 16 CCLCLEQYQDPRVLACLHTYCRHCL 40
>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLS-CGHVFCFLCVR 257
EY+C +C + P ++ CGH FC C++
Sbjct: 23 EYECPICQLAFRDPIQIEECGHRFCQSCLQ 52
>SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 135 LKHAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
L+ A ++ S E +C++C + P L C H FC C+
Sbjct: 83 LQMASILDSLRQEAECSLCHKTPSEPKILKCFHTFCNECL 122
>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
Length = 471
Score = 30.7 bits (66), Expect = 1.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCVR 257
++C +C P + CGH +C C++
Sbjct: 20 FECGLCGDFYVDPVTILCGHTYCLACIK 47
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
+++C +C P CGH FC C+
Sbjct: 327 DFECKLCFNLLLEPVTSLCGHSFCRDCL 354
>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
Length = 594
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C +CL++ Q P L+C H +C C+
Sbjct: 16 CCLCLEQYQDPRVLACLHTYCRHCL 40
>SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20)
Length = 470
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E CA+C++ P L C H FC C+
Sbjct: 12 EVTCAICIEHFTDPRLLPCLHTFCRHCL 39
>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C +C + + P SCGH FC C+
Sbjct: 194 CPLCRRVFKDPVITSCGHTFCQACI 218
>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1555
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVR 257
CA+C + P SCGH +C C++
Sbjct: 30 CAICHIVVKDPILTSCGHSYCKCCIQ 55
>SB_18762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 165 NMEYDCAVCLQKCQHPTKLSCGHVFCFLC 251
N E+ CA+CL + P C H C C
Sbjct: 20 NEEFHCAICLDVLEKPLSSKCQHSCCSDC 48
>SB_46701| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17)
Length = 442
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSICIEHFNDPRVLPCFHSFCRHCLEELAVHSE 47
>SB_21628| Best HMM Match : zf-B_box (HMM E-Value=1.4e-17)
Length = 291
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSICIEHFNDPRVLPCFHSFCRHCLEELAVHSE 47
>SB_6628| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 89
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSICIEHFNDPRVLPCFHSFCRHCLEELAVHSE 47
>SB_51226| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 82
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSICIEHFNDPRVLPCFHSFCRHCLEELAVHSE 47
>SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 745
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSICIEHFNDPRVLPCFHSFCRHCLEELAVHSE 47
>SB_43880| Best HMM Match : zf-B_box (HMM E-Value=5.1e-15)
Length = 405
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 11 EVTCSICIEHFNDPRVLPCFHSFCRHCLEELAVHSE 46
>SB_6802| Best HMM Match : zf-B_box (HMM E-Value=5e-18)
Length = 316
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSICIEHLNDPRVLPCLHSFCRHCLEELAVHSE 47
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCF-LCVRV*LIKAEN 281
C VC ++ + C H C+ CVR+ ++K EN
Sbjct: 14 CVVCCEEIEFSAVGKCDHPVCYKCCVRMRVLKQEN 48
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C++CL + Q P L+C H +C C+
Sbjct: 17 CSLCLGQYQDPRVLACLHTYCRHCL 41
>SB_28248| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 119
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSICIEHFNDPRVLPCLHSFCRHCLEELAVHSE 47
>SB_26592| Best HMM Match : zf-B_box (HMM E-Value=1.3e-18)
Length = 355
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVRCSICIEHFNDPRVLPCFHSFCRHCLEELAVHSE 47
>SB_53640| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 62
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSICIEHFNDPRVLPCLHSFCRHCLEELAVHSE 47
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCF-LCVRV*LIKAEN 281
C VC ++ + C H C+ CVR+ ++K EN
Sbjct: 14 CVVCCEEIEFSAVGKCDHPVCYKCCVRMRVLKQEN 48
>SB_48027| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-10)
Length = 62
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSICIEHFNDPRVLPCLHSFCRHCLEELAVHSE 47
>SB_41431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 17 EVTCSICIEHFDDPRVLPCLHSFCRHCLEELAVHSE 52
>SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)
Length = 562
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAEN 281
+ C +C Q P + +CGH C C + L N
Sbjct: 32 FRCTICKHVLQEPLQTTCGHRICESCFELSLRHLNN 67
>SB_22421| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
Length = 463
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSICIEHFNDPRVLPCLHSFCRHCLEELAVHSE 47
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 11 EVTCSICIEHFNDPRVLPCLHSFCRHCLEELAVHSE 46
>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
Length = 784
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C VC Q+ P L C H FC C+
Sbjct: 62 CRVCNQRFNKPKLLHCLHSFCQSCI 86
>SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 306
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVRV*LIK--AENVQCAA 296
C +C + + CGH FC +C+ + EN +C A
Sbjct: 18 CGICAEVLERAVLTPCGHSFCGVCLETWMNAKLEENEKCPA 58
>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C +CL + + P LSC H C C+
Sbjct: 21 CPICLDEFKEPKTLSCMHDLCRKCL 45
>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2342
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSLCIEHFNDPRVLPCFHSFCRHCLEELAVHSE 47
>SB_57762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSLCIEHFNDPRVLPCLHSFCRHCLEELAVHSE 47
>SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)
Length = 406
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +3
Query: 150 LIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCVR 257
L+ H C C + + C HVFC+ C++
Sbjct: 344 LVLFHQARLTCPCCNTRKKDAILTKCFHVFCYECLK 379
>SB_37786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLC 251
E+ CA+CL + P C H C C
Sbjct: 169 EFHCAICLDVLEKPLSSKCQHSCCSDC 195
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQC 290
C +C+ ++ CGH FC C+ L + E C
Sbjct: 18 CNICVGVLENAITTICGHSFCESCLETWLSRPEVQSC 54
>SB_18515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 12 EVTCSLCIEHFNDPRVLPCLHSFCRHCLEELAVHSE 47
>SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15)
Length = 629
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAE 278
E C++C++ P L C H FC C+ + +E
Sbjct: 132 EVTCSLCIEHFNDPRVLPCLHSFCRHCLEELAVHSE 167
>SB_50665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLC 251
E+ CA+CL + P C H C C
Sbjct: 165 EFHCAICLDVLEKPLSSKCQHSCCSDC 191
>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLC 251
E+ CA+CL + P C H C C
Sbjct: 73 EFHCAICLDVLEKPLSSKCQHSCCSDC 99
>SB_38368| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-15)
Length = 846
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLC 251
E+ CA+CL + P C H C C
Sbjct: 313 EFHCAICLDVLEKPLSSKCQHSCCSDC 339
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLC 251
E+ CA+CL + P C H C C
Sbjct: 639 EFHCAICLDVLEKPLSSKCQHSCCSDC 665
>SB_23299| Best HMM Match : zf-C3HC4 (HMM E-Value=5.9e-06)
Length = 418
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLC 251
E+ CA+CL + P C H C C
Sbjct: 171 EFHCAICLDVLEKPLSSKCQHSCCSDC 197
>SB_22842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLC 251
E+ CA+CL + P C H C C
Sbjct: 316 EFHCAICLDVLEKPLSSKCQHSCCSDC 342
>SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0)
Length = 603
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 215 KTILRSCFLFSLCEGVAHQSRKCAMCRTEIPL-DYFENPVLLDKSNLQ 355
K IL CF F+ E HQ R A+ ++ L +Y E+P D+S LQ
Sbjct: 242 KRILPECFSFADREEQDHQFRYIALELCDVTLQEYVEDP-RFDRSELQ 288
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 165 NMEYDCAVCLQKCQHPTKLSCGHVFCFLC 251
N+ + C +C + ++P C H FC C
Sbjct: 240 NLPFACIMCRKTFKNPVVTKCLHYFCEAC 268
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLS-CGHVFCFLCV 254
C C + +P +L+ CGHV+C CV
Sbjct: 1951 CPACFCEVDNPYQLATCGHVYCRGCV 1976
>SB_58031| Best HMM Match : DB (HMM E-Value=1.5)
Length = 297
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 131 CTQACCINFLT*YGI*LCCLLAKMSTSNKTILRSCFLFSLCEGVAHQSRKCAMCRTEIPL 310
C Q C I + G C L +++T+NK+ + + + C+ ++H + C+T+
Sbjct: 35 CLQHCDIPGTSINGF---CKLKRIATTNKSDADNSYNKACCQDLSHLCQDIDCCQTD--- 88
Query: 311 DYFENPVLLD-KSNLQY 358
D F+ + D S +QY
Sbjct: 89 DNFDGTLFKDLPSAIQY 105
>SB_16508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +3
Query: 153 IFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++ + +C++C + + P L C H FC C+
Sbjct: 11 VYELSKHLNCSLCHRLIRGPKLLPCLHSFCLACL 44
>SB_10749| Best HMM Match : DB (HMM E-Value=1.5)
Length = 616
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 131 CTQACCINFLT*YGI*LCCLLAKMSTSNKTILRSCFLFSLCEGVAHQSRKCAMCRTEIPL 310
C Q C I + G C L +++T+NK+ + + + C+ ++H + C+T+
Sbjct: 249 CLQHCDIPGTSINGF---CKLKRIATTNKSDADNSYNKACCQDLSHLCQDIDCCQTD--- 302
Query: 311 DYFENPVLLD-KSNLQY 358
D F+ + D S +QY
Sbjct: 303 DNFDGTLFKDLPSAIQY 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,691,439
Number of Sequences: 59808
Number of extensions: 424917
Number of successful extensions: 1197
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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