Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS01000
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032639-3|CAA21635.1| 283|Caenorhabditis elegans Hypothetical ... 38 0.005
AL132876-38|CAD21663.2| 224|Caenorhabditis elegans Hypothetical... 38 0.007
U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w... 38 0.009
Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical p... 37 0.015
U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical pr... 36 0.035
U40421-3|AAA81439.2| 347|Caenorhabditis elegans Hypothetical pr... 35 0.046
U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical pr... 34 0.081
Z66495-6|CAA91275.2| 547|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z66561-4|CAA91457.2| 185|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical p... 33 0.19
Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical pr... 33 0.19
AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical ... 33 0.25
AC199170-5|ABO33263.1| 95|Caenorhabditis elegans Hypothetical ... 33 0.25
U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger pr... 32 0.43
AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical ... 32 0.43
Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical pr... 31 0.75
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 30 1.3
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 30 1.3
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 30 1.3
U42438-8|AAF99867.2| 368|Caenorhabditis elegans Homolog of yeas... 30 1.7
AF105010-1|AAD16893.1| 368|Caenorhabditis elegans LAG1Ce-1 prot... 30 1.7
L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein. 29 3.0
AF106580-2|AAK71369.1| 439|Caenorhabditis elegans Abnormal embr... 29 3.0
Z78413-3|CAB01659.1| 202|Caenorhabditis elegans Hypothetical pr... 29 4.0
U97193-12|AAB52441.1| 283|Caenorhabditis elegans Hypothetical p... 29 4.0
AL031635-7|CAB54384.2| 487|Caenorhabditis elegans Hypothetical ... 29 4.0
AF099919-6|AAC68803.1| 261|Caenorhabditis elegans Hypothetical ... 29 4.0
AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 29 4.0
AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical... 29 4.0
Z68104-2|CAA92113.1| 359|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z83105-8|CAB05488.1| 496|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z70208-5|CAA94134.1| 201|Caenorhabditis elegans Hypothetical pr... 28 7.0
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF067611-1|AAC19182.1| 603|Caenorhabditis elegans Hypothetical ... 28 7.0
Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical pr... 27 9.2
U21310-4|AAA62518.1| 165|Caenorhabditis elegans Hypothetical pr... 27 9.2
>AL032639-3|CAA21635.1| 283|Caenorhabditis elegans Hypothetical
protein Y38F1A.2 protein.
Length = 283
Score = 38.3 bits (85), Expect = 0.005
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 162 HNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
H ++C +CL P CGH+FC C+
Sbjct: 99 HQSSHECPICLANASFPVLTDCGHIFCCECI 129
>AL132876-38|CAD21663.2| 224|Caenorhabditis elegans Hypothetical
protein Y105E8A.14 protein.
Length = 224
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +3
Query: 168 MEYDCAVCLQKCQHPTKL-SCGHVFCFLCVR 257
++ +CAVC + PT + SCGH FCF+C++
Sbjct: 20 IDKECAVCYSEMILPTTIPSCGHKFCFICLK 50
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Frame = +2
Query: 392 WYYEGRN-GWWKYDER 436
W Y GR+ GWW++D R
Sbjct: 132 WLYRGRHQGWWRFDPR 147
>U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform a protein.
Length = 650
Score = 37.5 bits (83), Expect = 0.009
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCVR 257
+ C++CL+ ++P+ L CGH+FC+ C++
Sbjct: 253 FQCSICLEN-KNPSALFCGHLFCWTCIQ 279
>Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical
protein C55A6.1 protein.
Length = 228
Score = 36.7 bits (81), Expect = 0.015
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 165 NMEYDCAVCLQKCQHPTKL-SCGHVFCFLCVR 257
N++ +C +C K PT + +CGH FCF+C++
Sbjct: 7 NIDAECPICQCKMIVPTTIPACGHKFCFICLK 38
>U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical
protein ZC13.1b protein.
Length = 398
Score = 35.5 bits (78), Expect = 0.035
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E CAVC P KL C HVFC C+
Sbjct: 334 EQPCAVCHGDLLQPIKLECTHVFCKFCI 361
>U40421-3|AAA81439.2| 347|Caenorhabditis elegans Hypothetical
protein C02B8.6 protein.
Length = 347
Score = 35.1 bits (77), Expect = 0.046
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQCA 293
C +C P +L C H FC++C++ I+ + + CA
Sbjct: 5 CTICHNTPNRPVRLDCNHEFCYICIKG-SIQNDMLNCA 41
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 347 NLQYAANVDGVEGFQWYYEGR-NGWWKYDER 436
N+Q NV V+ F W Y R +GWW++D+R
Sbjct: 244 NVQANFNVARVKFF-WLYSSRGDGWWRFDQR 273
>U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical
protein C26B9.6 protein.
Length = 306
Score = 34.3 bits (75), Expect = 0.081
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 180 CAVCLQKCQHPTKL-SCGHVFCFLCVR 257
C +C K PT++ +CGH FC++C++
Sbjct: 107 CYICYYKLTIPTRIENCGHEFCYVCLK 133
>Z66495-6|CAA91275.2| 547|Caenorhabditis elegans Hypothetical
protein C36A4.8 protein.
Length = 547
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQC 290
E C +C + P +C H+FC C+ + VQC
Sbjct: 18 ELKCGICCSTYKDPILSTCFHIFCRSCINACFERKRKVQC 57
>Z66561-4|CAA91457.2| 185|Caenorhabditis elegans Hypothetical
protein F08G12.5 protein.
Length = 185
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 180 CAVCLQKCQH-PTKLSCGHVFCFLCV 254
CAVCL Q P L+CGH FC C+
Sbjct: 40 CAVCLNIFQGIPQTLTCGHSFCHRCI 65
>Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.19
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C +CL + + P L C H FC+ C+
Sbjct: 43 CPICLDRYKQPKLLPCQHTFCYPCL 67
>Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical
protein T02C1.1 protein.
Length = 160
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++ CAVCL P + CGH +C C+
Sbjct: 5 DFCCAVCLDFFVEPCIIECGHSYCRFCI 32
>Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.19
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C +CL + + P L C H FC+ C+
Sbjct: 43 CPICLDRYKQPKLLPCQHTFCYPCL 67
>AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical
protein T26C12.3 protein.
Length = 393
Score = 32.7 bits (71), Expect = 0.25
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLC 251
C CLQ + P L CGH C +C
Sbjct: 110 CPHCLQIFEQPISLQCGHSLCLIC 133
>AC199170-5|ABO33263.1| 95|Caenorhabditis elegans Hypothetical
protein T08D2.4 protein.
Length = 95
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +3
Query: 165 NMEYDCAVCLQKCQ---H-PTKLSCGHVFCFLCV 254
NM+ C++C+++ H P L CGH FC +C+
Sbjct: 21 NMKPTCSICMEEFDANSHIPKVLICGHSFCIICI 54
>U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger
protein protein 1 protein.
Length = 381
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLS----CGHVFCFLCVR 257
C VC Q TKL+ CGH FC C+R
Sbjct: 22 CQVCYQPFNETTKLARSLHCGHTFCTECIR 51
>AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical
protein C39F7.2 protein.
Length = 765
Score = 31.9 bits (69), Expect = 0.43
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLC 251
E C +C++ + P L+CGH C +C
Sbjct: 4 ELKCTICIRFFEDPIILTCGHSLCRMC 30
>Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical
protein C16C10.7 protein.
Length = 235
Score = 31.1 bits (67), Expect = 0.75
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++C +CL + CGH+FC+ C+
Sbjct: 24 FECNICLDAAKDAVVSLCGHLFCWPCL 50
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 180 CAVCLQ-KCQHPTKLSCGHVFCFLCVR 257
CA C Q KCQ P CG +FC+ C R
Sbjct: 187 CAACPQLKCQRP---DCGTLFCYHCKR 210
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 180 CAVCLQ-KCQHPTKLSCGHVFCFLCVR 257
CA C Q KCQ P CG +FC+ C R
Sbjct: 187 CAACPQLKCQRP---DCGTLFCYHCKR 210
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 180 CAVCLQ-KCQHPTKLSCGHVFCFLCVR 257
CA C Q KCQ P CG +FC+ C R
Sbjct: 187 CAACPQLKCQRP---DCGTLFCYHCKR 210
>U42438-8|AAF99867.2| 368|Caenorhabditis elegans Homolog of yeast
longevity geneprotein 1 protein.
Length = 368
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -1
Query: 184 AQSYSILCEKINTACLSTHKLSHTYLPISKLLKYVCSFVVFHNFLMFQINFGWIWTNIIV 5
+ S++I ++ T L +H +S +L KL++Y NF+ W+ T +I
Sbjct: 180 SSSWTINFVRVGTLILLSHDVSDVFLEGGKLVRYDAHNKNMTNFMFVLFFSSWVATRLIY 239
Query: 4 F 2
+
Sbjct: 240 Y 240
>AF105010-1|AAD16893.1| 368|Caenorhabditis elegans LAG1Ce-1
protein.
Length = 368
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -1
Query: 184 AQSYSILCEKINTACLSTHKLSHTYLPISKLLKYVCSFVVFHNFLMFQINFGWIWTNIIV 5
+ S++I ++ T L +H +S +L KL++Y NF+ W+ T +I
Sbjct: 180 SSSWTINFVRVGTLILLSHDVSDVFLEGGKLVRYDAHNKNMTNFMFVLFFSSWVATRLIY 239
Query: 4 F 2
+
Sbjct: 240 Y 240
>L26987-1|AAA62312.1| 627|Caenorhabditis elegans par-2 protein.
Length = 627
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C +C Q P ++CGH +C C+
Sbjct: 56 CPLCDQLFDRPVMVTCGHSYCEPCI 80
>AF106580-2|AAK71369.1| 439|Caenorhabditis elegans Abnormal
embryonic partitioningof cytoplasm protein 2, isoform a
protein.
Length = 439
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C +C Q P ++CGH +C C+
Sbjct: 56 CPLCDQLFDRPVMVTCGHSYCEPCI 80
>Z78413-3|CAB01659.1| 202|Caenorhabditis elegans Hypothetical
protein T01C3.3 protein.
Length = 202
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = +3
Query: 177 DCAVCLQKCQHPTKL----SCGHVFCFLCV 254
+C VC QK T++ CGH C C+
Sbjct: 132 ECLVCYQKFDENTRIPRVMDCGHTLCDFCI 161
>U97193-12|AAB52441.1| 283|Caenorhabditis elegans Hypothetical
protein C06A5.8a protein.
Length = 283
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLS----CGHVFCFLCVR 257
C VC TKL+ CGH FC C++
Sbjct: 38 CQVCCTNYNETTKLARGLHCGHTFCTECIK 67
>AL031635-7|CAB54384.2| 487|Caenorhabditis elegans Hypothetical
protein Y47D3B.11 protein.
Length = 487
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 159 SHNMEYDCAVCLQKCQHPTKLS---CGHVFCFLCV 254
SH+ + C +CL++ + T+L CGH F CV
Sbjct: 310 SHSAQERCVICLEEYEEGTELRVLFCGHEFHPKCV 344
>AF099919-6|AAC68803.1| 261|Caenorhabditis elegans Hypothetical
protein F40G9.14 protein.
Length = 261
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Frame = +3
Query: 177 DCAVCLQKCQ-----HPTKLSCGHVFCFLCVRV 260
+C +C +K + P +CGH +C C++V
Sbjct: 137 ECKICFEKYEVTGNRSPRVFNCGHTYCESCIQV 169
>AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical
protein F40G9.12 protein.
Length = 230
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Frame = +3
Query: 177 DCAVCLQKCQ----H-PTKLSCGHVFCFLCVR 257
+C +C + + H P LSCGH +C +C++
Sbjct: 18 ECKICYKNYETSGDHCPRVLSCGHTYCEICIQ 49
>AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical
protein Y47G6A.31 protein.
Length = 212
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Frame = +3
Query: 177 DCAVCL---QKCQHPTKL--SCGHVFCFLCV 254
+C++C QH KL +CGH FC+ C+
Sbjct: 33 ECSICFFDFDDFQHLPKLLENCGHTFCYSCL 63
>Z68104-2|CAA92113.1| 359|Caenorhabditis elegans Hypothetical
protein F08B12.2 protein.
Length = 359
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSC-GHVFCFLCV 254
C +CL+K + T L G+VFC+ C+
Sbjct: 307 CPICLKKRVNDTALFVSGYVFCYTCI 332
>Z83105-8|CAB05488.1| 496|Caenorhabditis elegans Hypothetical
protein F14H3.8 protein.
Length = 496
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 251 CEGVAHQSRKCAMCRTEIPLDYFENPVLLDK 343
CE + + KC + + +PL F N +L+D+
Sbjct: 233 CE-IVQEEHKCRLSNSNLPLQVFHNHLLMDQ 262
>Z70208-5|CAA94134.1| 201|Caenorhabditis elegans Hypothetical
protein F54B11.5 protein.
Length = 201
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 147 VLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
+L + ++E +C +C++ + L C H FC C+
Sbjct: 118 ILTQTSDVEGNCVICMENI-NDLLLPCLHAFCIRCI 152
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = +3
Query: 180 CAVCLQK-----CQH-PTKLSCGHVFCFLCVRV*LIKAENVQC 290
C +C + +H P L+CGH C C+ ++ V+C
Sbjct: 6 CKICFDRFSDTDSEHIPRNLTCGHALCHKCITA-MVNNSTVEC 47
>AF067611-1|AAC19182.1| 603|Caenorhabditis elegans Hypothetical
protein C45G7.4 protein.
Length = 603
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +3
Query: 180 CAVCLQKCQH----PTKLSCGHVFCFLCV 254
C VC + H P L CGH FC C+
Sbjct: 24 CEVCFEVFNHENRPPKLLPCGHNFCESCI 52
>Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical
protein F47G9.4 protein.
Length = 808
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLC 251
C +C + + P LSC H C C
Sbjct: 8 CTICKNEFEEPILLSCQHTTCRKC 31
>U21310-4|AAA62518.1| 165|Caenorhabditis elegans Hypothetical
protein F40H6.1 protein.
Length = 165
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 329 VLLDKSNLQYAANVDGVEGFQWYYEGRNGWWKY 427
+LLD S + Y A V GV GF W+ NG+ ++
Sbjct: 66 ILLDVSLIAYLA-VLGVLGFIWWQVSNNGYTQF 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,808,264
Number of Sequences: 27780
Number of extensions: 345294
Number of successful extensions: 1143
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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