Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS01000
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   8.1  

>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 443 ELYAHHISTNHFFLHNTIGILPLHQHWQHTED*TCPIEQGFQSS 312
           E+Y  ++++    + N I ++ L  HW        P+ QGF S+
Sbjct: 234 EVYFLNMASVFMRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSN 277


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 88  KYVCSFVVFHNFLMFQINFGWIW 20
           K  C F  F N +++ +  GWIW
Sbjct: 146 KAYCLFS-FLNTIVYCVPAGWIW 167


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 392 WYYEGRNGWWKYDER 436
           WY+  RN  +K D+R
Sbjct: 282 WYWIDRNSAYKIDQR 296


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 569 GAKGYPTVTCQRNSRYKNQY*SKCQLK*KMKLK 667
           G KG+   +  +N+ Y+ +Y + C++   M+ K
Sbjct: 206 GCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRK 238


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 569 GAKGYPTVTCQRNSRYKNQY*SKCQLK*KMKLK 667
           G KG+   +  +N+ Y+ +Y + C++   M+ K
Sbjct: 3   GCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRK 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,746
Number of Sequences: 438
Number of extensions: 3977
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)