Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS01000
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 42 4e-04
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 41 9e-04
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 40 0.002
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 39 0.003
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 39 0.003
At2g44410.1 68415.m05523 expressed protein 39 0.003
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 39 0.004
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 38 0.005
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 38 0.006
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa... 38 0.006
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 38 0.008
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa... 37 0.014
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 37 0.014
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 37 0.014
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 37 0.014
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 37 0.014
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 36 0.033
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 36 0.033
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 35 0.057
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 35 0.057
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 34 0.075
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 34 0.075
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 34 0.100
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa... 34 0.100
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 34 0.100
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 33 0.13
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 33 0.13
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 33 0.17
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 33 0.23
At4g34370.1 68417.m04883 IBR domain-containing protein similar t... 32 0.30
At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger) fa... 32 0.30
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 32 0.40
At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing... 31 0.53
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 31 0.53
At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger) fa... 31 0.70
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 31 0.93
At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger) fa... 31 0.93
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 31 0.93
At1g24440.1 68414.m03079 expressed protein similar to MTD2 [Medi... 31 0.93
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger) fa... 30 1.6
At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger) fa... 30 1.6
At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger) fa... 30 1.6
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 30 1.6
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At2g01150.1 68415.m00024 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 29 3.8
At3g48030.1 68416.m05236 hypoxia-responsive family protein / zin... 29 3.8
At2g21380.1 68415.m02544 kinesin motor protein-related 29 3.8
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 28 5.0
At1g65430.1 68414.m07423 zinc finger protein-related contains we... 28 5.0
At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At5g09610.1 68418.m01112 pumilio/Puf RNA-binding domain-containi... 28 6.6
At5g01450.1 68418.m00058 expressed protein 28 6.6
At2g31760.1 68415.m03878 zinc finger protein-related contains lo... 28 6.6
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 27 8.7
At1g17230.1 68414.m02099 leucine-rich repeat family protein / pr... 27 8.7
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 27 8.7
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C +CL QHPT CGHVFC+ C+
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCI 351
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 40.7 bits (91), Expect = 9e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVR 257
E CA+CL+ C P+ +CGH FC C+R
Sbjct: 721 ELSCAICLEICFEPSTTTCGHSFCKKCLR 749
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 159 SHNMEYD--CAVCLQKCQHPTKLSCGHVFCFLC 251
S +EYD CA+CL+ +P L CGH+FC C
Sbjct: 222 SIELEYDLTCAICLETVFNPYALKCGHIFCNSC 254
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 39.1 bits (87), Expect = 0.003
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCV 254
+DC +CL Q P CGH+FC+ C+
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLFCWPCI 72
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 39.1 bits (87), Expect = 0.003
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCV 254
+DC +CL Q P CGH+FC+ C+
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLFCWPCI 72
>At2g44410.1 68415.m05523 expressed protein
Length = 413
Score = 39.1 bits (87), Expect = 0.003
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLC 251
+DC +CL+K + P CGH+FC+ C
Sbjct: 123 FDCNICLEKAEDPILTCCGHLFCWGC 148
>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
[Homo sapiens] GI:899300; contains Pfam profiles
PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 335
Score = 38.7 bits (86), Expect = 0.004
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 129 CVLKHAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLC 251
C L +V + +++ C++CL P L+CGH++C++C
Sbjct: 217 CELSDSVKV---DIDLTCSICLDTVFDPISLTCGHIYCYMC 254
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 38.3 bits (85), Expect = 0.005
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++DC +CL + + P CGH+FC+ C+
Sbjct: 18 DFDCNICLDQVRDPVVTLCGHLFCWPCI 45
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++ C VCL+ P LSCGH+ CF CV
Sbjct: 23 QFLCCVCLELLYKPIVLSCGHLSCFWCV 50
Score = 34.3 bits (75), Expect = 0.075
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQC 290
C+ C + P L+CGHV+C CV ++E ++C
Sbjct: 192 CSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKC 228
>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 425
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQCAAQK 302
+DC +CL + P +CGH++C+ C+ L +E +C K
Sbjct: 139 FDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQVSEAKECPVCK 181
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQCAA 296
C+VC + P CGHVFC+ CV V I +N C A
Sbjct: 395 CSVCSDPPKDPVVTLCGHVFCYECVSV-NINGDNNTCPA 432
>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 243
Score = 36.7 bits (81), Expect = 0.014
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCV 254
+DC +CL P CGH+FC+ C+
Sbjct: 42 FDCNICLDTAHDPVVTLCGHLFCWPCI 68
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQCAAQK 302
+DC +CL + P CGH++C+ C+ L ++ +C K
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQCAAQK 302
+DC +CL + P CGH++C+ C+ L ++ +C K
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQCAAQK 302
+DC +CL + P CGH++C+ C+ L ++ +C K
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCK 179
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 35.5 bits (78), Expect = 0.033
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C +CL+ P SCGH+FCF C+
Sbjct: 245 CPICLEYPLCPQITSCGHIFCFPCI 269
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 35.5 bits (78), Expect = 0.033
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQCAAQ 299
C +C+Q + +CGH FC++C+ L + C +Q
Sbjct: 52 CPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQ 91
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 35.5 bits (78), Expect = 0.033
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
+++C +C + Q P CGH+FC+ C+
Sbjct: 25 DFECNICFELAQDPIVTLCGHLFCWPCL 52
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 35.5 bits (78), Expect = 0.033
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCV 254
++C +CL Q P CGH+FC+ C+
Sbjct: 21 FECNICLDLAQDPIVTLCGHLFCWPCL 47
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 34.7 bits (76), Expect = 0.057
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 168 MEYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
+E C +CL+ P L C HVFC CV
Sbjct: 21 LELKCPLCLKLLNRPVLLPCDHVFCDSCV 49
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 34.7 bits (76), Expect = 0.057
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 168 MEYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
+E C +CL+ P L C HVFC CV
Sbjct: 21 LELKCPLCLKLLNRPVLLPCDHVFCDSCV 49
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 34.3 bits (75), Expect = 0.075
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 168 MEYDCAVCLQKCQHPTKLSCGHVFCFLC 251
+E C++C+Q + P CGH FC C
Sbjct: 125 LEIFCSICIQLPERPVTTPCGHNFCLKC 152
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E+ C +C + P C H FC C+
Sbjct: 495 EFSCQICRKVLSLPVTTPCAHNFCKACL 522
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 34.3 bits (75), Expect = 0.075
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 168 MEYDCAVCLQKCQHPTKLSCGHVFCFLC 251
+E C++C+Q + P CGH FC C
Sbjct: 125 LEIFCSICIQLPERPVTTPCGHNFCLKC 152
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E+ C +C + P C H FC C+
Sbjct: 495 EFSCQICRKVLSLPVTTPCAHNFCKACL 522
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 33.9 bits (74), Expect = 0.100
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 168 MEYDCAVCLQKCQHPTKLSCGHVFCFLC 251
+E C++C+Q + P CGH FC C
Sbjct: 125 LEIFCSICIQLPERPITTPCGHNFCLKC 152
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E+ C +C + P C H FC C+
Sbjct: 492 EFSCQICREVLSLPVTTPCAHNFCKACL 519
>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 33.9 bits (74), Expect = 0.100
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVR 257
E C VC+ + + + CGH FC LC R
Sbjct: 199 EISCCVCMVRSKGAAFIPCGHTFCRLCSR 227
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 33.9 bits (74), Expect = 0.100
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGHVFCFLCV 254
+ C +CL+ + P CGH+FC+ C+
Sbjct: 17 FGCNICLELAREPIVTLCGHLFCWPCL 43
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E C +CL LSC HVFC C+
Sbjct: 348 ELKCPICLSLYNSAVSLSCNHVFCNACI 375
>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVR 257
E C VC+ + + + CGH FC LC R
Sbjct: 214 ELGCCVCMVRSKGAAFIPCGHTFCRLCSR 242
>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 304
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVR 257
E C VC+ + + + CGH FC LC R
Sbjct: 253 ELGCCVCMVRSKGAAFIPCGHTFCRLCSR 281
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C VC + P CGH+FC+ CV
Sbjct: 679 CCVCHDPPEDPVVTLCGHIFCYQCV 703
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLC 251
E C VC+ K + + CGH FC LC
Sbjct: 309 ELSCCVCMVKIKGASFTPCGHTFCKLC 335
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
CA+C +K P L C H+FC CV
Sbjct: 365 CAICQEKMHTPILLRCKHMFCEDCV 389
>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
melanogaster}; contains Pfam profile PF01485: IBR domain
Length = 597
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 156 FSHNMEYDCAVCLQKC--QHPTKLSCGHVFCFLC 251
F + + C VC++ H T++ CGH FC C
Sbjct: 115 FPQSSQMSCDVCMEDLPGDHMTRMDCGHCFCNNC 148
>At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger proteins
RHG1a [Arabidopsis thaliana] GI:3822225, RHY1a
[Arabidopsis thaliana] GI:3790593; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 202
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +3
Query: 159 SHNMEYD-CAVCLQKCQH-----PTKLSCGHVFCFLCV 254
S NME D C++CLQ PT++SC HVF C+
Sbjct: 145 SFNMETDSCSICLQSLVSSSKTGPTRMSCSHVFHSSCL 182
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 31.9 bits (69), Expect = 0.40
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVR 257
++ C +CL CGH+FC C++
Sbjct: 124 KFSCPICLCPFTQEVSTKCGHIFCKKCIK 152
>At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing
protein similar to SP|O00623 Peroxisome assembly protein
12 (Peroxin-12) (Peroxisome assembly factor-3) (PAF-3)
{Homo sapiens}; contains Pfam profile PF04757: Pex2 /
Pex12 amino terminal region
Length = 393
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLS-CGHVFCFLCV 254
CA+CLQK +P+ ++ G VFC+ CV
Sbjct: 339 CALCLQKRANPSVVTVSGFVFCYSCV 364
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 141 HAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
+A L+ + E +C +C + SC HVFC C+
Sbjct: 566 NANLVDENKSEQECGLCHDPAEDYVVTSCAHVFCKACL 603
>At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger C3HC4 type (RING finger), PF02182: YDG/SRA
domain
Length = 465
Score = 31.1 bits (67), Expect = 0.70
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLC 251
+ +C++C Q P + CGH FC C
Sbjct: 106 DLNCSLCNQLPDRPVTILCGHNFCLKC 132
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 30.7 bits (66), Expect = 0.93
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +3
Query: 132 VLKHAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
+L+ V ++DC +C+ + C H+FC C+
Sbjct: 600 LLQKLVAALQDGEDFDCPICISPPTNIIITRCAHIFCRACI 640
>At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 472
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 120 DNLCVLKHAVLIFSHNMEYDCAVCLQKCQHPTKL----SCGHVFCFLCV 254
D L V + +I N +DCAVCL + + KL C H F C+
Sbjct: 114 DTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCI 162
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 30.7 bits (66), Expect = 0.93
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C C + + P CGH+FC+ CV
Sbjct: 751 CYECNEPPEKPVVTLCGHIFCYECV 775
>At1g24440.1 68414.m03079 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812
Length = 251
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAEN 281
E +C +CL+ C +C H C C R K+E+
Sbjct: 152 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSES 188
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVR 257
C VC+ + + + CGH FC +C R
Sbjct: 166 CCVCMGRKKGAAFIPCGHTFCRVCSR 191
>At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 260
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAEN 281
E +C +CL+ C +C H C C R +K+++
Sbjct: 159 EEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQS 195
>At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV 260
++ C +C+ CGH+FC C+++
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKM 174
>At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV 260
++ C +C+ CGH+FC C+++
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKM 174
>At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCVRV 260
++ C +C+ CGH+FC C+++
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKM 174
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 132 VLKHAVLIFSHNMEYDCAVCLQK--CQHPTKLSCGHVFCFLC 251
+L+ V+ E+ C +C + +SCGH FC C
Sbjct: 116 ILEGPVVTTPDGREFTCGICFDSYTLEEIVSVSCGHPFCATC 157
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVR 257
C +C ++ + KL CGH+F C+R
Sbjct: 292 CIICREEMTNAKKLICGHLFHVHCLR 317
>At2g01150.1 68415.m00024 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 147
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 156 FSHNMEYDCAVCLQKC---QHPTKLSCGHVFCFLCV 254
+S N DC VCL K + KL C HVF C+
Sbjct: 66 YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCL 101
>At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 272
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +3
Query: 180 CAVCLQKC---QHPTKLSCGHVFCFLCVR 257
C +C QK + +KL CGH F F C++
Sbjct: 227 CVICQQKLKDNEEVSKLGCGHDFHFGCIK 255
>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 177 DCAVCLQKCQHPT---KLSCGHVFCFLCV 254
+C+VCL K Q + KL CGH+F C+
Sbjct: 102 ECSVCLSKFQGDSEINKLKCGHLFHKTCL 130
>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 177 DCAVCLQKCQHPT---KLSCGHVFCFLCV 254
+C+VCL K Q + KL CGH+F C+
Sbjct: 102 ECSVCLSKFQGDSEINKLKCGHLFHKTCL 130
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E+ C +C Q P C H FC C+
Sbjct: 512 EFKCQICQQVLTLPVTTPCAHNFCKACL 539
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLC 251
C+ C+Q + P CGH C C
Sbjct: 146 CSFCMQLPERPVTKPCGHNACLKC 169
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E+ C +C Q P C H FC C+
Sbjct: 515 EFKCQICQQVLTLPVTTPCAHNFCKACL 542
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLC 251
C+ C+Q + P CGH C C
Sbjct: 146 CSFCMQLPERPVTKPCGHNACLKC 169
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 171 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 254
E+ C +C + +P C H FC C+
Sbjct: 525 EFKCQICQKVMTNPVTTPCAHNFCKACL 552
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 602 FGR*PWGIPLHPPPASMIT--STELSHCLEVNNDKV 501
FGR P G+P+ PP A + T S EL H + N D V
Sbjct: 3751 FGRRPLGVPI-PPVAGIATLSSPELKHKVNSNVDDV 3785
>At3g48030.1 68416.m05236 hypoxia-responsive family protein / zinc
finger (C3HC4-type RING finger) family protein similar
to RING-H2 finger protein RHX1a [Arabidopsis thaliana]
GI:3790591; contains Pfam profiles PF00097: Zinc finger
C3HC4 type (RING finger), PF04588: Hypoxia induced
protein conserved region
Length = 349
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = +3
Query: 120 DNLCVLKHAVLIFSHNMEYDCAVCLQKCQHPTKLS----CGHVFCFLCV 254
D L V + + S +DCAVCL + KL C H F C+
Sbjct: 187 DALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCI 235
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 218 TILRSCFLFSLCEGVAHQSRKCAMCRTEIPLDYFENP 328
TIL C F LC+ + +C +CRT+I F P
Sbjct: 1021 TILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFP 1057
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVR 257
C +C ++ KL CGH+F C+R
Sbjct: 113 CIICREEMTSAKKLVCGHLFHVHCLR 138
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVR 257
C +C ++ KL CGH+F C+R
Sbjct: 221 CIICREEMTSAKKLVCGHLFHVHCLR 246
>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVR 257
C VC+ + + + CGH +C +C R
Sbjct: 156 CCVCMGREKGAAFIPCGHTYCRVCSR 181
>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 438
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVF-CFLCVRV*LIKAENVQC 290
CA+CL + CGHV C C++ IK++N C
Sbjct: 387 CAICLDAPSEAVCVPCGHVAGCMSCLKE--IKSKNWGC 422
>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 462
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVF-CFLCVRV*LIKAENVQC 290
CA+CL + CGHV C C++ IK++N C
Sbjct: 411 CAICLDAPSEAVCVPCGHVAGCMSCLKE--IKSKNWGC 446
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +3
Query: 132 VLKHAVLIFSHNMEYDCAVCLQKCQHPTKL---SCGHVFCFLC 251
+L+ V+ S + E C +C P K+ SCGH FC C
Sbjct: 121 ILESHVVPPSDDSELTCGICFDSYP-PEKIASVSCGHPFCTTC 162
>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
similarity to zinc finger proteins and a Pfam:PF01485
IBR domain
Length = 567
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 120 DNLCVLKHAVLIFSHNMEYDCAVCLQK--CQHPTKLSCGHVFCFLC 251
D + +L+ V+ F + E DC +C + +CGH FC C
Sbjct: 108 DAVGLLEKPVVDFPTDGELDCGICFETFLSDKLHAAACGHPFCDSC 153
>At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger)
family protein contains similarity to autocrine motility
factor receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 577
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 141 HAVLIFSHNME---YD--CAVCLQKCQHPTKLSCGHVFCFLCVR 257
HA L+ + + E YD CA+C + +L C H+F C+R
Sbjct: 319 HAALLDATSEELRDYDDECAICREPMAKAKRLHCNHLFHLGCLR 362
>At5g09610.1 68418.m01112 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806: Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain)
Length = 517
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 491 SKVHSDSPLLKAFSNSELYAHH 426
+K H + PL+ AF+N ELYA++
Sbjct: 85 NKNHPNPPLVTAFNNLELYANY 106
>At5g01450.1 68418.m00058 expressed protein
Length = 444
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 174 YDCAVCLQKCQHPTKLSCGH-VFCFLC 251
Y CA+C + LSCGH V CF C
Sbjct: 391 YLCAICYDAPRDCFFLSCGHCVACFQC 417
>At2g31760.1 68415.m03878 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 514
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +3
Query: 201 CQHPT-KLSCGHVFCFLC 251
C H T SCGH FC++C
Sbjct: 291 CNHMTCSASCGHRFCWIC 308
>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFC 242
C +C+ + + P + CGHV C
Sbjct: 331 CVICVSRRRVPAFIPCGHVVC 351
>At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 132
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +3
Query: 180 CAVCLQKCQHPTKL----SCGHVFCFLCVRV*LIKAEN 281
C +CL++ + ++ +CGHVF LC+ L + +N
Sbjct: 80 CPICLEEYEDDHQIRRLRNCGHVFHLLCIDSWLTQKQN 117
>At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 177 DCAVCLQKCQHPTKLSCGHVFCFLCVR 257
+CA+C + +L C H+F C+R
Sbjct: 336 ECAICREPMAKAKRLHCNHLFHLGCLR 362
>At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 177 DCAVCLQKCQHPTKLSCGHVFCFLCVR 257
+CA+C + +L C H+F C+R
Sbjct: 336 ECAICREPMAKAKRLHCNHLFHLGCLR 362
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 201 CQHPT-KLSCGHVFCFLCVR 257
C H T CGH FC++C++
Sbjct: 300 CNHMTCSAPCGHEFCWICLK 319
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1287
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCV 254
C +C + CGHVFC C+
Sbjct: 993 CGICNDAPEDAVASVCGHVFCKQCI 1017
>At1g17230.1 68414.m02099 leucine-rich repeat family protein / protein
kinase family protein contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
Length = 1133
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 563 PASMITSTELSHCL-EVNNDKVPASSKVHSDSPLLKAFSNSELYAHHISTNHFFLHN 396
PAS T E+ + E +SS + S++PL +A S+ +Y H + H L N
Sbjct: 1059 PASRPTMREVVAMITEARGSSSLSSSSITSETPLEEANSSKGMYLHIHTHTHTLLCN 1115
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 180 CAVCLQKCQHPTKLSCGHVFCFLCVRV*LIKAENVQC 290
C +C + CGHVFC C+ L + +N QC
Sbjct: 919 CGICNVAPKDAVVSLCGHVFCNQCICECLTR-DNNQC 954
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,890
Number of Sequences: 28952
Number of extensions: 305917
Number of successful extensions: 911
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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