Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00999
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999...    76   2e-14
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826...    28   7.9  

>03_02_1011 +
           13198641-13198899,13199471-13199604,13199805-13199934,
           13200290-13200450,13200587-13200688,13200786-13200890,
           13200965-13201093,13201180-13201320,13201855-13201955,
           13202300-13202357,13202656-13202943
          Length = 535

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 37/85 (43%), Positives = 55/85 (64%)
 Frame = +1

Query: 253 KDKTGKILTPAPFQGWLPSGTQARVEPNQKWFGNSRVISQNALQKFQEEFGAAVRNPYQV 432
           +D+ GKIL        LP+    R+EP+++WFGN+RV++Q  L+ F+EE  + + N Y V
Sbjct: 58  RDRGGKILKHDLQSKELPN---TRIEPDRRWFGNTRVVNQKELEFFREELQSRLSNNYNV 114

Query: 433 IMKPTNLPITLLNEKAKNARVHLLD 507
           I+K   LP++LL +  K AR HLLD
Sbjct: 115 ILKERKLPLSLLQDHQKQARAHLLD 139


>02_04_0114 +
           19879468-19880671,19882007-19882179,19882265-19882605,
           19882698-19882977,19883070-19883267,19883380-19883652
          Length = 822

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 427 QVIMKPTNLPITLLNEKAKNARVHLLD 507
           QV+ + T +P+T L+++ K   +HL D
Sbjct: 459 QVVSRWTGIPVTTLDQEEKEKLIHLAD 485


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,149,290
Number of Sequences: 37544
Number of extensions: 359167
Number of successful extensions: 773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)