Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00999
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.053
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)                30   2.0  
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   29   3.5  
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)               29   4.6  
SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)                 28   8.0  

>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 12/27 (44%), Positives = 23/27 (85%)
 Frame = +1

Query: 403 GAAVRNPYQVIMKPTNLPITLLNEKAK 483
           G  +++PY+V+M+ T LP++LL+E+A+
Sbjct: 2   GKVMKDPYKVVMRKTKLPLSLLDERAQ 28


>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
          Length = 1281

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 68  IKSHTNMGKVRSTPGAPRKQGFNKSGHSMNPDRPTEGLKGVGNPRSKGT 214
           +K  T   + ++TP  P K+G N + HS    RP  G +G  + RS  T
Sbjct: 497 LKQITRDNQSQNTPVLPSKRGKNINPHSRGTGRPARG-RGRVSDRSSAT 544


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 30   KSEKEVFFFHKRVLNRIQIWEKFGRLRVLPGNKGL 134
            K+  E  F H+++L+  + WE+F R RVLP +  L
Sbjct: 901  KNSTEAAFDHEKILHDSR-WERFWRERVLPADSEL 934


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 643 LSISFSFIIFLRAFFYRFMQII*IAEFKFTLFLCFL 536
           L + F+F++F+  FF+ F+  +  A F F +F  F+
Sbjct: 695 LFVVFAFVVFIFIFFFAFVIFVFNAFFVFVVFAFFV 730


>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
          Length = 550

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +1

Query: 313 TQARVEPNQKWFGNSRVISQNALQKFQEEFGAAVRNPYQVIMKPTNLPITLLNEKAKNAR 492
           TQ  +EP  KW  N+  ++ NAL + Q E G +        + P  LP+  L +   N  
Sbjct: 268 TQETLEPG-KWPNNTTTVNLNALNEQQPEQGGSSN------IVPVTLPLDSLGDSQNNGA 320

Query: 493 V 495
           +
Sbjct: 321 I 321


>SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)
          Length = 754

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/57 (38%), Positives = 28/57 (49%)
 Frame = -2

Query: 234 YICSLLIVPFDLGLPTPFKPSVGRSGFIECPDLLNPCFRGAPGVDRTFPIFVCDLIH 64
           YI  L+I   DLG+ +PF   V RS F     LLN    G P   R  PI  C +++
Sbjct: 396 YILHLMIEALDLGICSPFYKGV-RSLF--SSQLLN---EGIPQGTRLGPILFCVMVN 446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,336,235
Number of Sequences: 59808
Number of extensions: 436529
Number of successful extensions: 1014
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)