Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00999
         (679 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089700-1|AAL90438.1|  674|Drosophila melanogaster SD10213p pro...   144   1e-34
AF315579-1|AAL26879.1|  674|Drosophila melanogaster nuclear GTP ...   144   1e-34
AE013599-2507|AAF57834.1|  674|Drosophila melanogaster CG6501-PA...   144   1e-34

>AY089700-1|AAL90438.1|  674|Drosophila melanogaster SD10213p
           protein.
          Length = 674

 Score =  144 bits (348), Expect = 1e-34
 Identities = 66/86 (76%), Positives = 74/86 (86%)
 Frame = +1

Query: 250 KKDKTGKILTPAPFQGWLPSGTQARVEPNQKWFGNSRVISQNALQKFQEEFGAAVRNPYQ 429
           K+D+TGKILTPAPFQG LP+GT ARVEP  KWF NSRVISQ ALQKFQ+E G AV++PYQ
Sbjct: 56  KRDRTGKILTPAPFQGRLPAGTMARVEPTPKWFSNSRVISQTALQKFQDEIGKAVKDPYQ 115

Query: 430 VIMKPTNLPITLLNEKAKNARVHLLD 507
           VIMKP+ LP+TLLNE AK  RVHLLD
Sbjct: 116 VIMKPSQLPVTLLNEAAKYKRVHLLD 141



 Score =  105 bits (251), Expect = 7e-23
 Identities = 49/70 (70%), Positives = 54/70 (77%)
 Frame = +2

Query: 86  MGKVRSTPGAPRKQGFNKSGHSMNPDRPTEGLKGVGNPRSKGTIKRLQMYRNFKAKRIKP 265
           M KVRSTPG PR QGFN S HSMNP+RP  GLKGV +PR+KGTIKRLQMYRNFKAKR + 
Sbjct: 1   MPKVRSTPGKPRTQGFNHSNHSMNPERPKSGLKGVAHPRTKGTIKRLQMYRNFKAKRDRT 60

Query: 266 EKF*RQHPFK 295
            K     PF+
Sbjct: 61  GKILTPAPFQ 70



 Score = 38.7 bits (86), Expect = 0.007
 Identities = 22/54 (40%), Positives = 27/54 (50%)
 Frame = +3

Query: 510 EGFDRTFGPKKQRKRVNLNSAI*MICIKR*KKALRNMMKLNDIDRVRADSGVKE 671
           E FD TFGPKKQRKRV+L         K             D+D +R D+G K+
Sbjct: 143 ESFDSTFGPKKQRKRVSLKVRDLEDLSKAADDQADKYDSAKDLDLIREDTGEKK 196


>AF315579-1|AAL26879.1|  674|Drosophila melanogaster nuclear GTP
           binding protein protein.
          Length = 674

 Score =  144 bits (348), Expect = 1e-34
 Identities = 66/86 (76%), Positives = 74/86 (86%)
 Frame = +1

Query: 250 KKDKTGKILTPAPFQGWLPSGTQARVEPNQKWFGNSRVISQNALQKFQEEFGAAVRNPYQ 429
           K+D+TGKILTPAPFQG LP+GT ARVEP  KWF NSRVISQ ALQKFQ+E G AV++PYQ
Sbjct: 56  KRDRTGKILTPAPFQGRLPAGTMARVEPTPKWFSNSRVISQTALQKFQDEIGKAVKDPYQ 115

Query: 430 VIMKPTNLPITLLNEKAKNARVHLLD 507
           VIMKP+ LP+TLLNE AK  RVHLLD
Sbjct: 116 VIMKPSQLPVTLLNEAAKYKRVHLLD 141



 Score =  105 bits (251), Expect = 7e-23
 Identities = 49/70 (70%), Positives = 54/70 (77%)
 Frame = +2

Query: 86  MGKVRSTPGAPRKQGFNKSGHSMNPDRPTEGLKGVGNPRSKGTIKRLQMYRNFKAKRIKP 265
           M KVRSTPG PR QGFN S HSMNP+RP  GLKGV +PR+KGTIKRLQMYRNFKAKR + 
Sbjct: 1   MPKVRSTPGKPRTQGFNHSNHSMNPERPKSGLKGVAHPRTKGTIKRLQMYRNFKAKRDRT 60

Query: 266 EKF*RQHPFK 295
            K     PF+
Sbjct: 61  GKILTPAPFQ 70



 Score = 38.7 bits (86), Expect = 0.007
 Identities = 22/54 (40%), Positives = 27/54 (50%)
 Frame = +3

Query: 510 EGFDRTFGPKKQRKRVNLNSAI*MICIKR*KKALRNMMKLNDIDRVRADSGVKE 671
           E FD TFGPKKQRKRV+L         K             D+D +R D+G K+
Sbjct: 143 ESFDSTFGPKKQRKRVSLKVRDLEDLSKAADDQADKYDSAKDLDLIREDTGEKK 196


>AE013599-2507|AAF57834.1|  674|Drosophila melanogaster CG6501-PA
           protein.
          Length = 674

 Score =  144 bits (348), Expect = 1e-34
 Identities = 66/86 (76%), Positives = 74/86 (86%)
 Frame = +1

Query: 250 KKDKTGKILTPAPFQGWLPSGTQARVEPNQKWFGNSRVISQNALQKFQEEFGAAVRNPYQ 429
           K+D+TGKILTPAPFQG LP+GT ARVEP  KWF NSRVISQ ALQKFQ+E G AV++PYQ
Sbjct: 56  KRDRTGKILTPAPFQGRLPAGTMARVEPTPKWFSNSRVISQTALQKFQDEIGKAVKDPYQ 115

Query: 430 VIMKPTNLPITLLNEKAKNARVHLLD 507
           VIMKP+ LP+TLLNE AK  RVHLLD
Sbjct: 116 VIMKPSQLPVTLLNEAAKYKRVHLLD 141



 Score =  105 bits (251), Expect = 7e-23
 Identities = 49/70 (70%), Positives = 54/70 (77%)
 Frame = +2

Query: 86  MGKVRSTPGAPRKQGFNKSGHSMNPDRPTEGLKGVGNPRSKGTIKRLQMYRNFKAKRIKP 265
           M KVRSTPG PR QGFN S HSMNP+RP  GLKGV +PR+KGTIKRLQMYRNFKAKR + 
Sbjct: 1   MPKVRSTPGKPRTQGFNHSNHSMNPERPKSGLKGVAHPRTKGTIKRLQMYRNFKAKRDRT 60

Query: 266 EKF*RQHPFK 295
            K     PF+
Sbjct: 61  GKILTPAPFQ 70



 Score = 38.7 bits (86), Expect = 0.007
 Identities = 22/54 (40%), Positives = 27/54 (50%)
 Frame = +3

Query: 510 EGFDRTFGPKKQRKRVNLNSAI*MICIKR*KKALRNMMKLNDIDRVRADSGVKE 671
           E FD TFGPKKQRKRV+L         K             D+D +R D+G K+
Sbjct: 143 ESFDSTFGPKKQRKRVSLKVRDLEDLSKAADDQADKYDSAKDLDLIREDTGEKK 196


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,306,330
Number of Sequences: 53049
Number of extensions: 630720
Number of successful extensions: 1517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)