Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00999
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa...    75   4e-14
At5g07350.1 68418.m00839 tudor domain-containing protein / nucle...    30   1.2  
At4g03115.1 68417.m00424 mitochondrial substrate carrier family ...    28   4.9  
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam...    28   6.5  

>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 576

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 36/88 (40%), Positives = 58/88 (65%)
 Frame = +1

Query: 250 KKDKTGKILTPAPFQGWLPSGTQARVEPNQKWFGNSRVISQNALQKFQEEFGAAVRNPYQ 429
           K++  GKIL+       LP+   +R+ P+++WFGN+RV++Q  L+ F+EE    + + Y 
Sbjct: 49  KRNAGGKILSNEYQSKELPN---SRIAPDRRWFGNTRVVNQKELEYFREELQTKMSSNYN 105

Query: 430 VIMKPTNLPITLLNEKAKNARVHLLDMK 513
           VI+K   LP++LL +  K +RVHLLDM+
Sbjct: 106 VILKERKLPMSLLTDNKKQSRVHLLDME 133



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 137 KSGHSMNPDRPTEGLKGVGNPRSKGTIKRLQMYR 238
           K  HS++ +R  +G K     RSK T+ RL+MY+
Sbjct: 13  KPKHSLDANR-ADGKKKTTETRSKSTVNRLKMYK 45


>At5g07350.1 68418.m00839 tudor domain-containing protein / nuclease
            family protein contains Pfam domains PF00567: Tudor
            domain and PF00565: Staphylococcal nuclease homologue
          Length = 991

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 319  ARVEPNQKWFGNSRVISQNALQKFQEE 399
            AR+E  QKW    +  + +AL+KFQEE
Sbjct: 933  ARMEKRQKWGHKGKQAALDALEKFQEE 959


>At4g03115.1 68417.m00424 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 341

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
 Frame = +1

Query: 274 LTPAPFQGWLPSGTQARVEPNQKW-FGNSRVISQNALQKFQEEFGAAVRNPYQVI----- 435
           LT +   G L  G     + +  W FG++ V+ + A   F   F  A+ NP +V+     
Sbjct: 129 LTRSVLYGGLRLGLYEPTKVSFDWAFGSTNVLVKIASGAFAGAFSTALTNPVEVVKVRLQ 188

Query: 436 MKPTNLPITLLNE 474
           M P  +PI  + E
Sbjct: 189 MNPNAVPIAEVRE 201


>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
           protein 
          Length = 454

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 75  RIQIWEKFGRLRVLPGNKGLISLGIQ*TLIDPQRV 179
           RI IW + G+  + P   G    G+    IDP+ V
Sbjct: 200 RISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAV 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,518,937
Number of Sequences: 28952
Number of extensions: 312632
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)