Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00998
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0540 - 4055635-4055743,4055829-4055981,4056037-4056104,405...    30   1.9  
01_03_0093 - 12422558-12422607,12422679-12422935,12423565-124239...    28   7.5  

>03_01_0540 -
           4055635-4055743,4055829-4055981,4056037-4056104,
           4056486-4056580,4057180-4057241,4057371-4057410,
           4058124-4059141,4059231-4059611,4059873-4059880,
           4061005-4061067,4061416-4061719
          Length = 766

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 408 NRLQTRTL*AVRTRDH*HSLSIRFDMLKHNYKTLRQKTNNSHECSLHVGIE 256
           N LQ R L A+RT+D  + L    +  + N++  R    +S   SLH  I+
Sbjct: 606 NHLQDRVLEALRTQDSLNELDDCSEFERSNFEEYRSLVQSSPVSSLHSNIQ 656


>01_03_0093 -
           12422558-12422607,12422679-12422935,12423565-12423932,
           12423939-12424800,12425247-12425464
          Length = 584

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 578 NKKFKITVYNIKSLFLIRVYNSKL 507
           NK+  I  YN KS  +I VY+S L
Sbjct: 556 NKRVVIATYNFKSAIIISVYSSTL 579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,846,235
Number of Sequences: 37544
Number of extensions: 232859
Number of successful extensions: 356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)