Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00998
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47477| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  

>SB_47477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 420 TPSLNRLQTRT-L*AVRTRDH*HSLSIRFDMLKHNYKTLRQKTNNSHE 280
           T    R +T T L  +RTRD   S + R D+ KHN +    + N+S +
Sbjct: 281 TTHSKRAETVTSLVGLRTRDDIRSFTFRKDICKHNIRPKHHRANSSEK 328


>SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 306 RQKTNNSHECSLHVGIEL*PSFQQSMVLTTVPSSQSTKKTRTNT 175
           R +TN++   S +      PSF  +   T  P S+S KKT   T
Sbjct: 224 RPRTNSNSSVSSNSSASSIPSFNPNETFTITPQSESIKKTSKRT 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,192,640
Number of Sequences: 59808
Number of extensions: 308281
Number of successful extensions: 556
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)