Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00998
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    32   0.31 
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    32   0.31 

>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
            related protein 2 protein.
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = -2

Query: 536  FLIRVYNSKLS*AKLLFHFYKHPSGIDSIK*INNVRPITHHHSI 405
            F+  V  ++L+ A LLF+  +HP+ IDS+     V+PIT + SI
Sbjct: 988  FIPDVVKARLA-ASLLFYLIEHPTPIDSLSDSGIVKPITGNISI 1030


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
            PGP-2 protein.
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = -2

Query: 536  FLIRVYNSKLS*AKLLFHFYKHPSGIDSIK*INNVRPITHHHSI 405
            F+  V  ++L+ A LLF+  +HP+ IDS+     V+PIT + SI
Sbjct: 988  FIPDVVKARLA-ASLLFYLIEHPTPIDSLSDSGIVKPITGNISI 1030


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,981,375
Number of Sequences: 27780
Number of extensions: 238578
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)