Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00997
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 100 4e-22
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe... 33 0.054
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 29 0.50
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 27 2.0
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 27 2.0
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 27 2.0
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 27 2.7
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 4.7
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 6.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 6.1
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 25 8.1
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 8.1
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 8.1
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 99.5 bits (237), Expect = 4e-22
Identities = 38/52 (73%), Positives = 47/52 (90%)
Frame = +2
Query: 503 FPNSCCTSINEVICHGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGN 658
FP S CTS+NE+ICHGIPD RPL+DGDI N+DV++YH GFHGDLNET++VG+
Sbjct: 178 FPKSVCTSVNEIICHGIPDQRPLEDGDIVNIDVSLYHNGFHGDLNETYYVGD 229
Score = 97.9 bits (233), Expect = 1e-21
Identities = 49/90 (54%), Positives = 58/90 (64%)
Frame = +3
Query: 249 RSPDYADHPTGFPASEYAAKGSAQIKILDDEEIEGMRVACRLGREVLDEAARVCDVGVST 428
+ PDYA TG SE S ++K L +E EGMR CRLGREVLD AA G +T
Sbjct: 95 KRPDYAK--TGVSRSEQIEGRSFKLKRLTPKEQEGMRKVCRLGREVLDAAAAAVRPGTTT 152
Query: 429 DEIDRVVHEACIERECYPSPLNYYNFPTVV 518
DE+D +VH ACIER+C+PS LNYY FP V
Sbjct: 153 DELDSIVHNACIERDCFPSTLNYYAFPKSV 182
Score = 81.4 bits (192), Expect = 1e-16
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = +1
Query: 22 QLQCPTCIKLGIKGSFFCNQDCFKKSWKTHKIIHSLAKGDNTDAANVEYNPWPSYTFTGK 201
+LQCP C+ G+K S+FC Q+CF+ SW HK +H + + YNP+P + F G
Sbjct: 21 RLQCPKCLNDGVK-SYFCGQECFRNSWNIHKHLHRPPNVEKREDGT--YNPFPKFHFAGS 77
Query: 202 LRP-FPAGPKRTVPPHIGRRITLIIRPGSRLQSMLLKVQLKSRSLTMKRL 348
L+P +P P R VPPHI RP + Q++ RS +KRL
Sbjct: 78 LKPVYPLSPIRKVPPHIK-------RPDYAKTGVSRSEQIEGRSFKLKRL 120
>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 32.7 bits (71), Expect = 0.054
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = -1
Query: 503 IIIIQGTWVTFPFNASLVDYTVNLICANSYITHSSCFIQNFSAEAASNTHALNLFIV 333
++++ G W+TF N ++ + +I +N+++ S+ ++ S+ + L F V
Sbjct: 62 LLLLSGAWITFLLNVPMLAWNAKMIMSNTHMHDSTTIFKDVSSRQKRSFFKLACFAV 118
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 29.5 bits (63), Expect = 0.50
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +3
Query: 303 AKGSAQIKILDDEEIEGMRVACRLGREVLDEAARVCDVGVSTDEIDRVVHEACIERECYP 482
AK S I+IL E + +R LG+E D V S ++H C + Y
Sbjct: 57 AKKSDAIEILPISEFDPVRSLTTLGKEETDFLVDAVFVSESNHHEKEILHRTC---KRYR 113
Query: 483 SPLNYYNFPTV 515
PLN + P++
Sbjct: 114 IPLNIIDNPSL 124
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 193 TGKLR-PFPAGPKRTVPPHIGRRITLIIRPGSRLQSMLLKVQLKSRSLTMKR 345
TGK R P+G K+ VP R + I+ G R+ LLK +KR
Sbjct: 142 TGKTRVKLPSGAKKVVPSS-ARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKR 192
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 193 TGKLR-PFPAGPKRTVPPHIGRRITLIIRPGSRLQSMLLKVQLKSRSLTMKR 345
TGK R P+G K+ VP R + I+ G R+ LLK +KR
Sbjct: 142 TGKTRVKLPSGAKKVVPSS-ARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKR 192
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 193 TGKLR-PFPAGPKRTVPPHIGRRITLIIRPGSRLQSMLLKVQLKSRSLTMKR 345
TGK R P+G K+ VP R + I+ G R+ LLK +KR
Sbjct: 142 TGKTRVKLPSGAKKVVPSS-ARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKR 192
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 171 PMAVVYLYGKAETVPGRAKTHCAASYRSP 257
P A ++LYGKAE+ GR H SP
Sbjct: 338 PGATLHLYGKAESRKGRKMGHVTIISDSP 366
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 593 VDVTVYHRGFHGDLNETFFVGNVPETT 673
++ VYH HG ++ +VGN+P T
Sbjct: 265 IEDLVYHAYPHGPCSDCIYVGNLPWAT 291
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 575 DGDICNVDVTVYHRGFHGDLNETFFVGNV 661
D D+C+V VYH+G+ ++ VG +
Sbjct: 1168 DFDVCSVCGAVYHKGYVNEVCTVCDVGGI 1196
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 632 LNETFFVGNVPETTRKIS 685
LN+ + +G PE TRKIS
Sbjct: 1013 LNDEYMIGEDPELTRKIS 1030
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -1
Query: 677 YE*SLVHSQQKRFHLDHHGNLYGKLLHQHCICPHPVMD 564
Y S V S F +DH + + HQ C +MD
Sbjct: 419 YTFSTVRSALSGFSIDHSEKMMSPVFHQFLDCVWQIMD 456
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 460 QASWTTRSISSVLTPTSHTLAASSRTSLPR 371
+ S T++S S T T+HT +S LPR
Sbjct: 161 EKSTTSKSKSHTTTATTHTSRSSKSKGLPR 190
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 223 ALPGTVSAFP*RYTTAMGYIPRLQHRYCH 137
++P T+ P Y+ ++ P L H Y H
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSYVH 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,088
Number of Sequences: 5004
Number of extensions: 65034
Number of successful extensions: 207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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