Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00997
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30102| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 5e-19
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 7e-16
SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0) 34 0.100
SB_32586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 29 2.8
SB_54| Best HMM Match : Actin (HMM E-Value=0) 29 3.7
SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_824| Best HMM Match : Nop10p (HMM E-Value=4.9) 29 4.9
SB_56686| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.6
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 28 8.6
SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_50656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_35000| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_11314| Best HMM Match : LECT2 (HMM E-Value=8.3) 28 8.6
>SB_30102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 91.9 bits (218), Expect = 5e-19
Identities = 37/53 (69%), Positives = 47/53 (88%)
Frame = +2
Query: 524 SINEVICHGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRKI 682
SINEVICHGIPD RPL+DGDI N+D+TV++ G+HGDLNETFFVGNV + +++
Sbjct: 2 SINEVICHGIPDKRPLEDGDIVNLDITVFYNGYHGDLNETFFVGNVADEYKQL 54
>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 81.4 bits (192), Expect = 7e-16
Identities = 34/60 (56%), Positives = 47/60 (78%)
Frame = +2
Query: 503 FPNSCCTSINEVICHGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRKI 682
FP S CTS+NEV HGIP+ R LQ+GD+ +VD+++++ G HGDL ETF VGNV E+ R++
Sbjct: 105 FPKSVCTSVNEVAVHGIPNSRCLQNGDLLSVDISLFYGGVHGDLCETFLVGNVDESGRRL 164
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Frame = +3
Query: 273 PTGFPASEYAAKGSA-----QIKILDDEEIEGMRVACRLGREVLDEAARVCDVGVSTDEI 437
P P YA G ++I ++IE +R +C+L R V+ A ++ VG++T+EI
Sbjct: 23 PAHIPTPCYAETGKVPPHPWSVEIKTKQQIEAVRKSCQLARCVMRMAKQIVKVGITTEEI 82
Query: 438 DRVVHEACIERECYPSPLNYYNFPTVV 518
D VH+A IE YPSPLNY FP V
Sbjct: 83 DYHVHKAIIEHGAYPSPLNYRGFPKSV 109
>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
Length = 465
Score = 34.3 bits (75), Expect = 0.100
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 518 CTSINEVICHGIPDLR----PLQDGDICNVDVTVYHRGFHGDLNETFFVG 655
C S+N +CH P L L DGD+ +D V+ GF + T VG
Sbjct: 83 CISVNNCVCHFSPLLSEPDITLNDGDLVKIDFGVHIDGFIAVIGHTIVVG 132
>SB_32586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 55 IKGSFFCNQDCFKKSWKTHKIIHSLAKGDNTDAAN 159
I SF N CF ++WK+ ++I SL GD D N
Sbjct: 347 INASFATN--CFAQAWKSAEVIPSLNAGDPDDLEN 379
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 58 KGSFFCNQDCFKKSWKTHKIIHSLAKGDNTDAANVEYNPWP 180
K + +C++DC + WK HK I K +V P
Sbjct: 25 KSTMYCSKDCPRSHWKHHKAICKAKKHSKDSKLDVSTTTAP 65
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 384 VLDEAARVCDVGVSTDEIDRVVHEACIER 470
V+D + C G+STDE RVV A + R
Sbjct: 2098 VIDNGSGFCKAGLSTDESPRVVFPAIVGR 2126
>SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 144 YRCCKRGI*PMAVVYLYGKAETVPGRAKTHCAASYRSPDY 263
+ C +RGI PMA +L+G V + + A YR DY
Sbjct: 128 HECTRRGINPMA--WLHGNTSAVVCPYREYRAMQYRGEDY 165
>SB_824| Best HMM Match : Nop10p (HMM E-Value=4.9)
Length = 134
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +1
Query: 202 LRPFPAGPKRTVPPHIGRRITLIIRPGSRLQSMLLKVQLKSRSLTMKRLRACVLL 366
L P AGP + PP G +IT+IIR + + M QL+ R +T+ + A L+
Sbjct: 69 LCPVIAGPPPSPPPPFG-KITVIIRRSTSVVRMF--SQLRKREITVLKQTADPLM 120
>SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1888
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 7 CKSIAQLQCPTCIKLGIKGSFFCNQDCFKKSWKTHK 114
C AQ C C G +C Q C K W HK
Sbjct: 1846 CGQTAQFTCSACNSRG-----YCGQKCQLKDWGKHK 1876
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 88 FKKSWKTHKIIHSLAKGDNTDAANVEYNP 174
F K WK K+ KGD TD +N Y P
Sbjct: 2093 FPKRWKLAKVTPLFKKGDRTDPSN--YRP 2119
>SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +1
Query: 91 KKSWKTHKIIHSLAKGDNTDAANVEYNPWPSYTFTGKLRPFPAGPKRTVPPHIGRRITLI 270
+ SW T + SLA + V +P P+ + T +RP + PP +R L+
Sbjct: 284 RASWDTQSL-ESLAACVSRQGRQVTLHPSPAESLTTLMRPLSLELNQMEPPSSAKRPVLV 342
Query: 271 IRPG 282
G
Sbjct: 343 TMHG 346
>SB_50656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 49 LGIKGSFFCNQDCFKKSWKTHKIIHSL 129
LGIK Q C+KK H+I H+L
Sbjct: 125 LGIKQDIVLGQGCWKKGIVAHEIAHAL 151
>SB_35000| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 88 FKKSWKTHKIIHSLAKGDNTDAANVEYNP 174
F K WK K+ KGD TD +N Y P
Sbjct: 41 FPKRWKLAKVTPLFKKGDRTDPSN--YRP 67
>SB_11314| Best HMM Match : LECT2 (HMM E-Value=8.3)
Length = 382
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 85 CFKKSWKTHKIIHSLAKGDNTDAAN 159
CF ++WK+ ++I +L GD D N
Sbjct: 298 CFAQAWKSAEVIPNLKAGDPDDPEN 322
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,288,561
Number of Sequences: 59808
Number of extensions: 498399
Number of successful extensions: 1478
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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