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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00997
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45240.1 68415.m05632 methionyl aminopeptidase, putative / me...   105   2e-23
At4g37040.1 68417.m05246 metallopeptidase M24 family protein sim...    97   8e-21
At1g13270.2 68414.m01540 metallopeptidase M24 family protein sim...    87   1e-17
At1g13270.1 68414.m01541 metallopeptidase M24 family protein sim...    87   1e-17
At3g25740.1 68416.m03205 metallopeptidase M24 family protein sim...    80   1e-15
At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase fa...    40   0.002
At3g58580.1 68416.m06529 endonuclease/exonuclease/phosphatase fa...    36   0.035
At3g01640.1 68416.m00095 GHMP kinase family protein contains GHM...    29   2.3  
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic...    29   2.3  
At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ...    29   3.1  
At3g51800.2 68416.m05681 metallopeptidase M24 family protein sim...    29   3.1  
At3g51800.1 68416.m05680 metallopeptidase M24 family protein sim...    29   3.1  
At3g17940.1 68416.m02284 aldose 1-epimerase family protein simil...    29   4.0  
At5g37450.1 68418.m04507 leucine-rich repeat transmembrane prote...    28   5.3  
At3g13060.2 68416.m01628 expressed protein contains Pfam profile...    28   5.3  
At3g13060.1 68416.m01627 expressed protein contains Pfam profile...    28   5.3  
At2g46700.1 68415.m05827 calcium-dependent protein kinase, putat...    28   5.3  
At2g17010.1 68415.m01961 mechanosensitive ion channel domain-con...    28   5.3  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    27   9.3  
At2g30090.1 68415.m03662 GCN5-related N-acetyltransferase (GNAT)...    27   9.3  

>At2g45240.1 68415.m05632 methionyl aminopeptidase, putative /
           methionine aminopeptidase, putative / peptidase M,
           putative similar to SP|Q01662 Methionine aminopeptidase
           1 precursor (EC 3.4.11.18) {Saccharomyces cerevisiae};
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 398

 Score =  105 bits (253), Expect = 2e-23
 Identities = 44/60 (73%), Positives = 52/60 (86%)
 Frame = +2

Query: 503 FPNSCCTSINEVICHGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRKI 682
           FP SCCTS+NEVICHGIPD R L+DGDI NVDVTV ++G HGDLNET+FVGNV E +R++
Sbjct: 200 FPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVCYKGCHGDLNETYFVGNVDEASRQL 259



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 49/105 (46%), Positives = 59/105 (56%)
 Frame = +3

Query: 195 GKAETVPGRAKTHCAASYRSPDYADHPTGFPASEYAAKGSAQIKILDDEEIEGMRVACRL 374
           G  +  P   K    A    PD+A    G P  E  +     ++I   E+I+ MR  C++
Sbjct: 99  GPLKQYPISTKRVVPAEIEKPDWAID--GTPKVEPNSDLQHVVEIKTPEQIQRMRETCKI 156

Query: 375 GREVLDEAARVCDVGVSTDEIDRVVHEACIERECYPSPLNYYNFP 509
            REVLD AARV   GV+TDEIDRVVHEA I    YPSPLNYY FP
Sbjct: 157 AREVLDAAARVIHPGVTTDEIDRVVHEATIAAGGYPSPLNYYFFP 201



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
 Frame = +1

Query: 7   CKSIAQLQCPTCI--KLGIKGSFFCNQDCFKKSWKTHKIIHSLAK----GD-NTDAANVE 165
           C+  A LQCP CI  KL  + + FC Q+CFK +W +HK +H  A+    GD N+D  +  
Sbjct: 18  CEKPAHLQCPKCIDLKLPREQASFCTQECFKAAWSSHKSVHVKAQLSSIGDQNSDLISQG 77

Query: 166 Y----------NP-WPSYTFTGKLRPFPAGPKRTVPPHI 249
           +           P  P + +TG L+ +P   KR VP  I
Sbjct: 78  WLYCVKKGQARTPKLPHFDWTGPLKQYPISTKRVVPAEI 116


>At4g37040.1 68417.m05246 metallopeptidase M24 family protein
           similar to SP|O33343 Methionine aminopeptidase (EC
           3.4.11.18) (Peptidase M) {Mycobacterium tuberculosis};
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 350

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 40/60 (66%), Positives = 47/60 (78%)
 Frame = +2

Query: 503 FPNSCCTSINEVICHGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRKI 682
           FP S CTS+NE ICHGIPD RPL+DGDI N+DVTVY  G+HGD + TFF GNV E  +K+
Sbjct: 166 FPKSVCTSVNECICHGIPDSRPLEDGDIINIDVTVYLNGYHGDTSATFFCGNVDEKAKKL 225



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/69 (43%), Positives = 38/69 (55%)
 Frame = +3

Query: 312 SAQIKILDDEEIEGMRVACRLGREVLDEAARVCDVGVSTDEIDRVVHEACIERECYPSPL 491
           S+ +++ D + IE MR +  L   V D A  +   GV+TDEID  VH   IE   YPSPL
Sbjct: 102 SSGLEVHDKKGIECMRASGILAARVRDYAGTLVKPGVTTDEIDEAVHNMIIENGAYPSPL 161

Query: 492 NYYNFPTVV 518
            Y  FP  V
Sbjct: 162 GYGGFPKSV 170


>At1g13270.2 68414.m01540 metallopeptidase M24 family protein
           similar to SP|Q01662 Methionine aminopeptidase 1
           precursor (EC 3.4.11.18) {Saccharomyces cerevisiae};
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 283

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 36/60 (60%), Positives = 44/60 (73%)
 Frame = +2

Query: 503 FPNSCCTSINEVICHGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRKI 682
           FP S CTS+NE +CHGIPD R LQ GDI N+DVTVY  G+HGD + TFF G V E  +++
Sbjct: 185 FPKSVCTSVNECMCHGIPDSRQLQSGDIINIDVTVYLDGYHGDTSRTFFCGEVDEGFKRL 244



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 44/153 (28%), Positives = 65/153 (42%)
 Frame = +3

Query: 255 PDYADHPTGFPASEYAAKGSAQIKILDDEEIEGMRVACRLGREVLDEAARVCDVGVSTDE 434
           PD+   P  +  S      S++ +I   E I  MR AC L   VL+ A  +    V+T+E
Sbjct: 103 PDHIPRPP-YVESGVLPDISSEFQIPGPEGIAKMRAACELAARVLNYAGTLVKPSVTTNE 161

Query: 435 IDRVVHEACIERECYPSPLNYYNFPTVVVLQLMRLYVMEYQIYVHYRMGTYAMLM*QFTI 614
           ID+ VH+  IE   YPSPL Y  FP  V   +              + G    +     +
Sbjct: 162 IDKAVHDMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQSGDIINIDVTVYL 221

Query: 615 EVSMVI*MKPFLLGMYQRLLVKLVQVTHECLQK 713
           +       + F  G       +LV+VT ECL++
Sbjct: 222 DGYHGDTSRTFFCGEVDEGFKRLVKVTEECLER 254


>At1g13270.1 68414.m01541 metallopeptidase M24 family protein
           similar to SP|Q01662 Methionine aminopeptidase 1
           precursor (EC 3.4.11.18) {Saccharomyces cerevisiae};
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 369

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 36/60 (60%), Positives = 44/60 (73%)
 Frame = +2

Query: 503 FPNSCCTSINEVICHGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRKI 682
           FP S CTS+NE +CHGIPD R LQ GDI N+DVTVY  G+HGD + TFF G V E  +++
Sbjct: 185 FPKSVCTSVNECMCHGIPDSRQLQSGDIINIDVTVYLDGYHGDTSRTFFCGEVDEGFKRL 244



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 44/153 (28%), Positives = 65/153 (42%)
 Frame = +3

Query: 255 PDYADHPTGFPASEYAAKGSAQIKILDDEEIEGMRVACRLGREVLDEAARVCDVGVSTDE 434
           PD+   P  +  S      S++ +I   E I  MR AC L   VL+ A  +    V+T+E
Sbjct: 103 PDHIPRPP-YVESGVLPDISSEFQIPGPEGIAKMRAACELAARVLNYAGTLVKPSVTTNE 161

Query: 435 IDRVVHEACIERECYPSPLNYYNFPTVVVLQLMRLYVMEYQIYVHYRMGTYAMLM*QFTI 614
           ID+ VH+  IE   YPSPL Y  FP  V   +              + G    +     +
Sbjct: 162 IDKAVHDMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQSGDIINIDVTVYL 221

Query: 615 EVSMVI*MKPFLLGMYQRLLVKLVQVTHECLQK 713
           +       + F  G       +LV+VT ECL++
Sbjct: 222 DGYHGDTSRTFFCGEVDEGFKRLVKVTEECLER 254


>At3g25740.1 68416.m03205 metallopeptidase M24 family protein
           similar to SP|O33343 Methionine aminopeptidase (EC
           3.4.11.18) (Peptidase M) {Mycobacterium tuberculosis};
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 344

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 33/60 (55%), Positives = 45/60 (75%)
 Frame = +2

Query: 503 FPNSCCTSINEVICHGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRKI 682
           FP S CTS+NE + HGIPD RPLQ+GDI N+DV VY  G+HGD ++TF  G+V  + +++
Sbjct: 158 FPKSVCTSVNECMFHGIPDSRPLQNGDIINIDVAVYLDGYHGDTSKTFLCGDVNGSLKQL 217



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 49/153 (32%), Positives = 69/153 (45%)
 Frame = +3

Query: 255 PDYADHPTGFPASEYAAKGSAQIKILDDEEIEGMRVACRLGREVLDEAARVCDVGVSTDE 434
           PD+   P  +  S    + S++++I D   I  M+ AC L   VLD A  +    V+TDE
Sbjct: 76  PDHILKPL-YVESSKVPEISSELQIPDSIGIVKMKKACELAARVLDYAGTLVRPFVTTDE 134

Query: 435 IDRVVHEACIERECYPSPLNYYNFPTVVVLQLMRLYVMEYQIYVHYRMGTYAMLM*QFTI 614
           ID+ VH+  IE   YPSPL Y  FP  V   +              + G    +     +
Sbjct: 135 IDKAVHQMVIEFGAYPSPLGYGGFPKSVCTSVNECMFHGIPDSRPLQNGDIINIDVAVYL 194

Query: 615 EVSMVI*MKPFLLGMYQRLLVKLVQVTHECLQK 713
           +       K FL G     L +LV+VT ECL+K
Sbjct: 195 DGYHGDTSKTFLCGDVNGSLKQLVKVTEECLEK 227


>At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P31384 Glucose-repressible
           alcohol dehydrogenase transcriptional effector (Carbon
           catabolite repressor protein 4) {Saccharomyces
           cerevisiae}; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 602

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 19  AQLQCPTCIK--LGIKGSFFCNQDCFKKSWKTHKIIHSLAKGDNTDAANVEYNP 174
           A LQC  C+K  + +  S+ C+  CF  +W+ H+++H  A    T+  + E  P
Sbjct: 73  ATLQCLGCLKSKVPVAKSYHCSTKCFSDAWQHHRVLHERAASAATEGNDEEELP 126


>At3g58580.1 68416.m06529 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P31384 Glucose-repressible
           alcohol dehydrogenase transcriptional effector (Carbon
           catabolite repressor protein 4) {Saccharomyces
           cerevisiae}; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 605

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 19  AQLQCPTCIKLG--IKGSFFCNQDCFKKSWKTHKIIHSLAKGDN 144
           A LQC  C K    +  S+ C+  CF  +W+ H+ +H  A  +N
Sbjct: 73  ATLQCVFCSKRRSLVPKSYHCSPKCFTDAWQHHRTLHERAAAEN 116


>At3g01640.1 68416.m00095 GHMP kinase family protein contains GHMP
           kinases putative ATP-binding protein domain,
           Pfam:PF00288
          Length = 362

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -1

Query: 179 GHGLYSTFAASVLSP----FANE*IIL*VFHDFLKQSWLQKNEPLIPSLIQVG 33
           GHG+Y+    S+L P    +A         H  ++Q WL  +E +I S+ +VG
Sbjct: 202 GHGIYTPMDISLLPPLHLIYAENPSDSGKVHSMVRQRWLDGDEFIISSMKEVG 254


>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
           to chromomethylase CMT3 [Arabidopsis thaliana]
           GI:14583092, GI:14647157
          Length = 839

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 285 PASEYAAKGSAQIKILDDEEIEGMRVACRLGREVLDE 395
           P      K S++ K  DDE++E +R  C   R ++DE
Sbjct: 70  PIEVQPPKASSRKKTKDDEKVEIIRARCHYRRAIVDE 106


>At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 586

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +1

Query: 40  CIKLGIKGSFFCNQDCFKKSWK---THKIIHSLAKGDNTDA-ANVEYNPWPSYTFTGKLR 207
           CI L  +  FF  QD FKK  K   T K  + L +     A A+  +  + SY +TG+L+
Sbjct: 76  CI-LAARSKFF--QDLFKKEKKISKTEKPKYQLREMLPYGAVAHEAFLYFLSYIYTGRLK 132

Query: 208 PFPAGPKRTVPP 243
           PFP      V P
Sbjct: 133 PFPLEVSTCVDP 144


>At3g51800.2 68416.m05681 metallopeptidase M24 family protein
           similar to SP|P50580 Proliferation-associated protein
           2G4 {Mus musculus}; contains Pfam profile PF00557:
           metallopeptidase family M24
          Length = 401

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 518 CTSINEVICHGIP---DLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRK 679
           C S+N  + H  P   D   L+DGD+  +D+  +  GF   +  T  +   P + RK
Sbjct: 82  CISVNNTVGHFSPLASDESVLEDGDMVKIDMGCHIDGFIALVGHTHVLQEGPLSGRK 138


>At3g51800.1 68416.m05680 metallopeptidase M24 family protein
           similar to SP|P50580 Proliferation-associated protein
           2G4 {Mus musculus}; contains Pfam profile PF00557:
           metallopeptidase family M24
          Length = 392

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 518 CTSINEVICHGIP---DLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRK 679
           C S+N  + H  P   D   L+DGD+  +D+  +  GF   +  T  +   P + RK
Sbjct: 82  CISVNNTVGHFSPLASDESVLEDGDMVKIDMGCHIDGFIALVGHTHVLQEGPLSGRK 138


>At3g17940.1 68416.m02284 aldose 1-epimerase family protein similar
           to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149]
           from [Acinetobacter calcoaceticus]; contains Pfam
           profile PF01263 Aldose 1-epimerase
          Length = 341

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 459 CIERECYPSPLNYYNFPTVVV 521
           C+E + +P+ +N  NFP+VVV
Sbjct: 305 CLETQGFPNAINQSNFPSVVV 325


>At5g37450.1 68418.m04507 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 935

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +3

Query: 252 SPDYADHPTGFPASEYAAKGSA-QIKILDDEEIEGMRVACRLGREVLDEAARVCDVGVST 428
           +P Y D P  + +     K     + I+  E + GMR     GR ++ E    CD G+  
Sbjct: 775 TPGYVD-PEYYLSHRLTEKSDVYSLGIVFLEILTGMRPISH-GRNIVREVNEACDAGMMM 832

Query: 429 DEIDRVV---HEACIER 470
             IDR +    E C++R
Sbjct: 833 SVIDRSMGQYSEECVKR 849


>At3g13060.2 68416.m01628 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 634

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 5   GANQSHNYNALLVSNSGLKARSFVTKTVSKNRGRL 109
           G  Q  NY + L+SN G+  + ++    S+ RGR+
Sbjct: 296 GRGQGSNYGSRLISNVGMGNQGWIGVDNSRGRGRV 330


>At3g13060.1 68416.m01627 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 551

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 5   GANQSHNYNALLVSNSGLKARSFVTKTVSKNRGRL 109
           G  Q  NY + L+SN G+  + ++    S+ RGR+
Sbjct: 296 GRGQGSNYGSRLISNVGMGNQGWIGVDNSRGRGRV 330


>At2g46700.1 68415.m05827 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase homolog MCK1 [Zea mays]
           gi|1839597|gb|AAB47181
          Length = 595

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = +1

Query: 133 KGDNTDAANVEYNPWPSYTFTGKLRPFPAG----PKRT-VPPHIGRRITLIIRPGSRLQS 297
           +  NT A +   +PWPS    G   P P+G    P RT  P    RR      P   +++
Sbjct: 43  RAKNTPARSSNPSPWPSPFPHGSASPLPSGVSPSPARTSTPRRFFRRPFPPPSPAKHIKA 102

Query: 298 MLLK 309
            L+K
Sbjct: 103 SLIK 106


>At2g17010.1 68415.m01961 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 779

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +3

Query: 315 AQIKILDDEEIEGMRVA---C-RLGREVLDEAARVCDVGVSTDEIDRVVHEACIERECYP 482
           A+I + D E++  +R+A   C R+  +  D A R     V  +E+ +++ E  I+   YP
Sbjct: 696 AKIIVKDLEDLHIVRLAIWPCHRINHQ--DMAERWTRRAVLVEEVIKILLELDIQHRFYP 753

Query: 483 SPLNYYNFPTVV 518
             +N    PTVV
Sbjct: 754 LDINVRTMPTVV 765


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 315 AQIKILD-DEEIEGMRVACRLGREVLDEAARVCD-VGVSTDEIDRVVHEACIERE 473
           A+I++LD    IEG +     GR+V+   AR C+ + +  D I  + H+  IE+E
Sbjct: 112 AKIQLLDLPGIIEGAKDGKGRGRQVIS-TARTCNCILIVLDAIKPITHKRLIEKE 165


>At2g30090.1 68415.m03662 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 386

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 518 CTSINEVICHGIPDLRPLQDGDICNVDVTVYHRGFHGD 631
           C  +   +C  + ++  L DG  C V V    +G +GD
Sbjct: 298 CGKLVRALCEHVHNMAALNDGCACKVVVVEVDKGSNGD 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,080,016
Number of Sequences: 28952
Number of extensions: 351807
Number of successful extensions: 973
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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