Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00996
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    26   0.35 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.3  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   5.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.9  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = +2

Query: 563 DDEDSFKR---QFSKYIKLGVTADA 628
           +D+D +K+   QFSK IKLG+  D+
Sbjct: 418 EDKDGYKKFYEQFSKNIKLGIHEDS 442


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 365 CRLSTHHYWCSCLWSYEG 418
           C+  T HY C C + Y G
Sbjct: 76  CQDHTTHYTCHCPYGYTG 93


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -1

Query: 553 TSHVFSNMQTKDVSPCTSALNFLDSAS*PGNLLME*GTLRPPSTAPFIAPKT 398
           +S    ++Q    SP T    F  +   P +       L PP++ P ++PK+
Sbjct: 69  SSDTSQDLQHSYQSPQTQPARFYSTPIVP-HFAYNHNPLTPPNSEPLVSPKS 119


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 551 SLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 688
           ++E+DDED+ ++     I +    + +    KK H  ++  P  KK
Sbjct: 475 AVEEDDEDAIEKPAPVKISVQEVLNRVRKPTKKLH--LKNSPISKK 518


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 128 GLKVTILCALLIHMSCHVMV*RLV*QIMLQHIQLVCY*HEDC 253
           G K  IL  +L  ++C VMV   +     + IQ+V Y + +C
Sbjct: 182 GNKPVILTVVLPLLACGVMVVTHITMAHFKIIQVVPYCYINC 223


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 404 WSYEGCC*RWPQCSSFHQKIPWL*CRIQ 487
           WS       W  CSSF Q+     C I+
Sbjct: 403 WSVNAGMWMWLSCSSFFQQFFHCYCPIK 430


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,491
Number of Sequences: 336
Number of extensions: 3570
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)