Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00996
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 120 3e-28
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 120 3e-28
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.6
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 25 8.1
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.1
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.1
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 120 bits (288), Expect = 3e-28
Identities = 51/77 (66%), Positives = 63/77 (81%)
Frame = +1
Query: 1 GKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPR 180
GKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPR
Sbjct: 26 GKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPR 85
Query: 181 YGVKVGLTNYAAAYSTG 231
YG+K GL N+ AAY+TG
Sbjct: 86 YGIKWGLANWTAAYATG 102
Score = 85.0 bits (201), Expect = 9e-18
Identities = 36/61 (59%), Positives = 49/61 (80%)
Frame = +3
Query: 321 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNA 500
E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ +
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDD 192
Query: 501 E 503
E
Sbjct: 193 E 193
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/60 (48%), Positives = 41/60 (68%)
Frame = +2
Query: 509 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 688
R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY +A+ IR DPS +K
Sbjct: 196 RKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQK 255
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 120 bits (288), Expect = 3e-28
Identities = 51/77 (66%), Positives = 63/77 (81%)
Frame = +1
Query: 1 GKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPR 180
GKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPR
Sbjct: 26 GKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPR 85
Query: 181 YGVKVGLTNYAAAYSTG 231
YG+K GL N+ AAY+TG
Sbjct: 86 YGIKWGLANWTAAYATG 102
Score = 85.0 bits (201), Expect = 9e-18
Identities = 36/61 (59%), Positives = 49/61 (80%)
Frame = +3
Query: 321 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNA 500
E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ +
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDD 192
Query: 501 E 503
E
Sbjct: 193 E 193
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/60 (48%), Positives = 41/60 (68%)
Frame = +2
Query: 509 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 688
R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY +A+ IR DPS +K
Sbjct: 196 RKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQK 255
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 617 TADAIEAIYKKAHEAIRADPSHKKKELK 700
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 203 QIMLQHIQLVCY*HEDCSKTWT*HLIHWH 289
+IMLQH+++ C+KT + L WH
Sbjct: 395 EIMLQHLKVSMELSNPCAKTSSIFLCLWH 423
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 536 AEYMRSLEQDDEDSFKRQFSKYIK 607
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 630 LKPSTRKPMKPSVRIHPTRRK 692
L PS RKP+ V++HP +K
Sbjct: 384 LLPSLRKPLLNFVKVHPPSQK 404
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 560 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKD 706
+++++S ++ +K ++ V +KK +E IR+D LK+D
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKED 1071
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,861
Number of Sequences: 5004
Number of extensions: 57451
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -