Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00996
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   115   3e-26
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   115   3e-26
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395     28   8.4  
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    28   8.4  
01_03_0003 + 11509530-11512772                                         28   8.4  

>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  115 bits (277), Expect = 3e-26
 Identities = 53/77 (68%), Positives = 62/77 (80%)
 Frame = +1

Query: 1   GKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPR 180
           GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPR
Sbjct: 27  GKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPR 83

Query: 181 YGVKVGLTNYAAAYSTG 231
           YG++VGLTNYAAAY TG
Sbjct: 84  YGLEVGLTNYAAAYCTG 100



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 37/66 (56%), Positives = 49/66 (74%)
 Frame = +3

Query: 309 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 488
           +Y VEP D     FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+  + K
Sbjct: 127 DYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEK 185

Query: 489 KFNAEV 506
           + ++++
Sbjct: 186 QLDSDI 191



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 32/65 (49%), Positives = 48/65 (73%)
 Frame = +2

Query: 509 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 688
           R +I+G HVA+YMRS+ +++ + F+  FS+Y+K G+ AD +EA+YKK H AIRADP+  K
Sbjct: 193 RKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAK 252

Query: 689 KELKK 703
              K+
Sbjct: 253 STKKE 257


>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  115 bits (277), Expect = 3e-26
 Identities = 53/77 (68%), Positives = 62/77 (80%)
 Frame = +1

Query: 1   GKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPR 180
           GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPR
Sbjct: 27  GKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPR 83

Query: 181 YGVKVGLTNYAAAYSTG 231
           YG++VGLTNYAAAY TG
Sbjct: 84  YGLEVGLTNYAAAYCTG 100



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 37/66 (56%), Positives = 49/66 (74%)
 Frame = +3

Query: 309 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 488
           +Y VEP D     FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+  + K
Sbjct: 127 DYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEK 185

Query: 489 KFNAEV 506
           + ++++
Sbjct: 186 QLDSDI 191



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = +2

Query: 509 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 688
           R +I+G HVA+YMRS+ +++ + F+  FS+Y+K G+ AD +E++YKK H AIRADP+  K
Sbjct: 193 RKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAK 252

Query: 689 KELKK 703
              K+
Sbjct: 253 STKKE 257


>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
          Length = 794

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 624 MLLKPSTRKPMKPSVRIHPTRR 689
           ++++PS+R P  P+ R  PTRR
Sbjct: 288 VVMRPSSRPPQPPASRTSPTRR 309


>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 52  KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 174
           +YNT +YR +  +S K V C+ +   +  E DH+   A S  L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316


>01_03_0003 + 11509530-11512772
          Length = 1080

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 557  QDFSCIQQHANQRCEPLYFSIELFGFCIIARESFDGMRNIEA 432
            QDF C+Q+ A   C  L  S+ L+    + R +  G +++EA
Sbjct: 917  QDFPCLQELAISNCLSLN-SLSLYNMVALKRLTVKGCQDLEA 957


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,583
Number of Sequences: 37544
Number of extensions: 377835
Number of successful extensions: 950
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)