Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00996
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             123   1e-28
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)          91   1e-18
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)                 31   1.2  
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   29   2.8  
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    29   2.8  
SB_24205| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               28   6.5  
SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)            23   9.8  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  123 bits (297), Expect = 1e-28
 Identities = 54/66 (81%), Positives = 61/66 (92%)
 Frame = +3

Query: 309 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 488
           EYNVE VD  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PHS+KRFPGYD+ESK
Sbjct: 161 EYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFPGYDSESK 220

Query: 489 KFNAEV 506
            F+AEV
Sbjct: 221 DFSAEV 226



 Score =  102 bits (244), Expect = 3e-22
 Identities = 49/66 (74%), Positives = 55/66 (83%)
 Frame = +2

Query: 509 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 688
           R HIFG HVAEYMRSL ++DE+S+KRQFS YIK GV AD+IE IYK AH+AIRADP HKK
Sbjct: 228 RNHIFGKHVAEYMRSLAEEDEESYKRQFSAYIKNGVDADSIEGIYKAAHQAIRADPVHKK 287

Query: 689 KELKKD 706
            E KKD
Sbjct: 288 AE-KKD 292



 Score = 76.2 bits (179), Expect(2) = 6e-28
 Identities = 30/38 (78%), Positives = 35/38 (92%)
 Frame = +1

Query: 1   GKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 114
           GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 21  GKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58



 Score = 66.1 bits (154), Expect(2) = 6e-28
 Identities = 25/40 (62%), Positives = 36/40 (90%)
 Frame = +1

Query: 112 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 231
           ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG
Sbjct: 95  RIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTG 134


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 38/47 (80%), Positives = 43/47 (91%)
 Frame = +3

Query: 309 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 449
           EYNVE +D  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 66  EYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 31/39 (79%), Positives = 37/39 (94%)
 Frame = +1

Query: 115 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 231
           +AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTG 39


>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 545 MRSLEQDDEDSFKRQFSKYI----KLGVTADAIEAIYKKAHEAIRADPSHKKKELKK 703
           ++  EQ  ++ FK++ + Y+    K G T D IE   KK H     D  HK+   KK
Sbjct: 345 VKFFEQKQKEEFKKEETDYLDVFKKGGTTKDKIEKKDKKKHHKKHKDKEHKEHHHKK 401


>SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
          Length = 439

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = -1

Query: 691 FLLVGWIRTDGFMGFLVDGFNSICSDS*FYVLAELSLERILIILFKTSH 545
           FLL G  R D F+ F V GF    + S    LA +S+ER++ + F   H
Sbjct: 188 FLLSGRFRFDAFVVF-VSGFEYFSTFSSVNFLAAVSVERLVAVAFPFYH 235


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 439 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 326
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 439 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 326
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259


>SB_24205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 433 ASMFLIPSKDSLAMM-QNPKSSMLKYKGSHLWF 528
           A   L P +DS++++  + K   LKYKG+HL+F
Sbjct: 79  AIYILTPEEDSISLLVADFKEYPLKYKGAHLFF 111


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 76  LIVRLSNKDVTCQVAYSRIEGD-HIVC 153
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 124 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 222
           ++  GDH+  A+YSH ++ R+ V + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 484  DSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPV 386
            D+   P   +M   T+RPP T  F+   T+APV
Sbjct: 1653 DTTVAPETTVMPDTTMRPPKTDVFVTEATKAPV 1685


>SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)
          Length = 388

 Score = 23.0 bits (47), Expect(2) = 9.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
 Frame = +2

Query: 242 HEDCSKT-WT*HLIHWHNRCHR**IQC*TCRQWTRSI*MLFGCRLS------THHYWCSC 400
           HE C+ T ++ H+IH H  C        TC +++  +     C  +       HH WC+C
Sbjct: 253 HEWCTCTEYSEHMIH-HEWC--------TCTEYSEHMVHHVWCTCTEYSEHMVHHVWCTC 303



 Score = 23.0 bits (47), Expect(2) = 9.8
 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +2

Query: 380 HHYWCSCL-WSYEGCC*RWPQCSSFHQ 457
           HH WC+C  +S       W  C+ + +
Sbjct: 312 HHVWCTCTEYSEHMVHHEWCTCTEYSE 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,210,560
Number of Sequences: 59808
Number of extensions: 465521
Number of successful extensions: 1354
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)