Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00996
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   114   5e-26
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   114   5e-26
At5g65720.1 68418.m08271 cysteine desulfurase, mitochondrial (NI...    27   9.3  
At3g27025.1 68416.m03381 expressed protein                             27   9.3  

>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  114 bits (275), Expect = 5e-26
 Identities = 50/77 (64%), Positives = 61/77 (79%)
 Frame = +1

Query: 1   GKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPR 180
           GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+
Sbjct: 26  GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQ 85

Query: 181 YGVKVGLTNYAAAYSTG 231
           YG+ VGLTNYAAAY TG
Sbjct: 86  YGLTVGLTNYAAAYCTG 102



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 39/66 (59%), Positives = 52/66 (78%)
 Frame = +3

Query: 309 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 488
           +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+  E+K
Sbjct: 129 DFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENK 187

Query: 489 KFNAEV 506
           + +AE+
Sbjct: 188 QLDAEI 193



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/62 (51%), Positives = 45/62 (72%)
 Frame = +2

Query: 509 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 688
           R +I+G HV+ YM+ L +D+ +  +  FS YIK GV A++IE +YKK H AIRA+P+HKK
Sbjct: 195 RNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKK 254

Query: 689 KE 694
            E
Sbjct: 255 TE 256


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  114 bits (275), Expect = 5e-26
 Identities = 50/77 (64%), Positives = 61/77 (79%)
 Frame = +1

Query: 1   GKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPR 180
           GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+
Sbjct: 26  GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQ 85

Query: 181 YGVKVGLTNYAAAYSTG 231
           YG+ VGLTNYAAAY TG
Sbjct: 86  YGLTVGLTNYAAAYCTG 102



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 39/66 (59%), Positives = 52/66 (78%)
 Frame = +3

Query: 309 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 488
           +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+  E+K
Sbjct: 129 DFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENK 187

Query: 489 KFNAEV 506
           + +AE+
Sbjct: 188 QLDAEI 193



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 31/60 (51%), Positives = 43/60 (71%)
 Frame = +2

Query: 509 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 688
           R +I+G HV+ YM+ L +D+ +  +  FS YIK GV A++IE +YKK H AIRADP+ KK
Sbjct: 195 RNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKK 254


>At5g65720.1 68418.m08271 cysteine desulfurase, mitochondrial (NIFS)
           identical to Cysteine desulfurase, mitochondrial
           precursor  (SP:O49543)  {Arabidopsis thaliana};
           identical to cDNA GI:12656131; contains Pfam profile
           PF00266: aminotransferase, class V
          Length = 453

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 357 YLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVQ 509
           YLD+  A T    RVF AM  +       PHS     G++AE+   NA  Q
Sbjct: 56  YLDMQ-ATTPIDPRVFDAMNASQIHEYGNPHSRTHLYGWEAENAVENARNQ 105


>At3g27025.1 68416.m03381 expressed protein 
          Length = 299

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
 Frame = +2

Query: 587 QFSKYIKLGVTADAIEAIYKKAHEA---IRADP-----SHKKKELKKD 706
           Q   YI+   T DAI+ ++KK H A    R D      S KKK+LKK+
Sbjct: 183 QGEPYIEKHSTRDAIKRVFKKLHGASSKTRNDDEDDSMSKKKKDLKKN 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,246,422
Number of Sequences: 28952
Number of extensions: 303642
Number of successful extensions: 798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)