Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00995
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   120   3e-28
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   120   3e-28
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   2.6  
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    26   4.5  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   7.9  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  120 bits (288), Expect = 3e-28
 Identities = 51/77 (66%), Positives = 63/77 (81%)
 Frame = +1

Query: 1   GKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPR 180
           GKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPR
Sbjct: 26  GKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPR 85

Query: 181 YGVKVGLTNYAAAYSTG 231
           YG+K GL N+ AAY+TG
Sbjct: 86  YGIKWGLANWTAAYATG 102



 Score = 85.0 bits (201), Expect = 9e-18
 Identities = 36/61 (59%), Positives = 49/61 (80%)
 Frame = +3

Query: 321 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNA 500
           E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + 
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDD 192

Query: 501 E 503
           E
Sbjct: 193 E 193



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 29/60 (48%), Positives = 41/60 (68%)
 Frame = +2

Query: 509 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIQLGVTADAIEAIYKKAHEAIRADPSHKK 688
           R +I+G HVAEYM  L  DDE+ +++QFS  I  G+ +D +E IY +A+  IR DPS +K
Sbjct: 196 RKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQK 255


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  120 bits (288), Expect = 3e-28
 Identities = 51/77 (66%), Positives = 63/77 (81%)
 Frame = +1

Query: 1   GKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPR 180
           GKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPR
Sbjct: 26  GKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPR 85

Query: 181 YGVKVGLTNYAAAYSTG 231
           YG+K GL N+ AAY+TG
Sbjct: 86  YGIKWGLANWTAAYATG 102



 Score = 85.0 bits (201), Expect = 9e-18
 Identities = 36/61 (59%), Positives = 49/61 (80%)
 Frame = +3

Query: 321 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNA 500
           E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + 
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDD 192

Query: 501 E 503
           E
Sbjct: 193 E 193



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 29/60 (48%), Positives = 41/60 (68%)
 Frame = +2

Query: 509 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIQLGVTADAIEAIYKKAHEAIRADPSHKK 688
           R +I+G HVAEYM  L  DDE+ +++QFS  I  G+ +D +E IY +A+  IR DPS +K
Sbjct: 196 RKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQK 255


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 536  AEYMRSLEQDDEDSFKRQFSKYIQ 607
            +EY+++L   D  SFK+ F K+IQ
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 509 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIQLGVTADAI 631
           R  + GL VAEY R +E  D   F     ++ Q G    A+
Sbjct: 277 RVALTGLTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSAL 317


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 203 QIMLQHIQLVCY*HEDCSKTWT*HLIHWH 289
           +IMLQH+++       C+KT +  L  WH
Sbjct: 395 EIMLQHLKVSMELSNPCAKTSSIFLCLWH 423


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 630 LKPSTRKPMKPSVRIHPTRRK 692
           L PS RKP+   V++HP  +K
Sbjct: 384 LLPSLRKPLLNFVKVHPPSQK 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,738
Number of Sequences: 5004
Number of extensions: 56004
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)