Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00995
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 580 QETI-QQVHTTRSHCRCY*SHLQESP*SHPCGSIPQE 687
           +ETI   V TTR +  CY SH+      +  G +PQ+
Sbjct: 302 EETIISSVFTTRHNATCYLSHVDPDVVQY-FGYLPQD 337


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 580 QETI-QQVHTTRSHCRCY*SHLQESP*SHPCGSIPQE 687
           +ETI   V TTR +  CY SH+      +  G +PQ+
Sbjct: 8   EETIISSVFTTRHNATCYLSHVDPDVVQY-FGYLPQD 43


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 7   TDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAY 123
           TD   RK ++ +++ K ++    ++V + N+D    +AY
Sbjct: 288 TDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGSAIAY 326


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 244  VLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQ 146
            V+   +   L   +S    HHNV  H    RTQ
Sbjct: 1661 VISDSESGRLDTEMSTWGYHHNVNKHCTIHRTQ 1693


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 452 GMRNIEATVNSTLHSSKD 399
           GM NIE  + +T +SSK+
Sbjct: 193 GMNNIETYIVNTNYSSKN 210


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +2

Query: 617 TADAIE-AIYKKAHEAIRADP 676
           T   IE A  KK H AIR +P
Sbjct: 619 TVQVIEDAAQKKKHRAIRPEP 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,356
Number of Sequences: 438
Number of extensions: 3763
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)